Gene Information

Name : kdsD (xccb100_1363)
Accession : YP_001902769.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Virulence
Product : arabinose-5-phosphate isomerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0794
EC number : 5.3.1.13
Position : 1581411 - 1582412 bp
Length : 1002 bp
Strand : -
Note : -

DNA sequence :
ATGGCCGTCTCGCACCTGCCCTCCGCCACCGTCAGCGACGCCAGCCTGGTCGCCAGCGGGCAGCGCGTGCTCGAGATCGA
GCAGGCGGCCCTGGCCGCGCTGGGCGCACGCATCGGTGCGCCGTTTGCCGCCGCCTGCCGGCTGGTGCTGGCCTCGCGCG
GGCGGGTGGTCGCCACCGGCATGGGCAAATCCGGGCATATCGCGCGCAAGATCGCCGCCACCCTGGCCTCCACCGGCACC
CCGGCGTTCTTCGTGCACCCGGGCGAGGCCGGGCATGGCGACCTGGGCATGATCACCGAGGCCGACATCGTGCTGGCGTT
GTCGTATTCGGGCGAATCGGACGAAGTCCGCATGCTGCTGCCGGTGCTCAAGCGCCAGGGCAACCCGATCATCGCGATGA
CCGGCCGCCCCGCCTCCACCCTGGCGCAGGCCGCCGACGTGCACCTGGATGTCAGCGTGTCTGCCGAAGCCTGCCCCCTG
CACCTGGCGCCGACCTCCAGCACCACCGCCTCATTGGCGATGGGCGATGCGTTGGCGGTGGCCCTGCTGGACGCGCGCGG
CTTCACCGCAGACGACTTCGCCCGCTCGCATCCGGCCGGTAGCCTGGGGCGCCGCCTGCTGCTGCACATCACCGATGTGA
TGCACGGCGGCGACGAGCTGCCGCGCGTGCGCGAGGACGCCAGCCTGAGCGAGGCGCTGATGGAGATGAGCCGCAAGCGC
CTGGGCATGACCGCCGTGGTGGACGCGCAAGAGCGGCTGATCGGCCTGTTCACCGACGGCGATCTGCGCCGCGCGCTGGA
CAGCGACATCGACGTGCGCAGCGCCGGCATTGCCGAGGTGATGACCCGCAACCCCAAGACCATCGGTGCCGACCAGCTGG
CCGCCGAGGCCGCGCGGCTGATGGAGGACTACAAGATCAATGGCCTGATCGTGGTCGATGCGCAGCAGCGCGCGGTCGGC
GCATTGAACATTCACGACCTGTTGCGCGCCAAGGTGGTTTAA

Protein sequence :
MAVSHLPSATVSDASLVASGQRVLEIEQAALAALGARIGAPFAAACRLVLASRGRVVATGMGKSGHIARKIAATLASTGT
PAFFVHPGEAGHGDLGMITEADIVLALSYSGESDEVRMLLPVLKRQGNPIIAMTGRPASTLAQAADVHLDVSVSAEACPL
HLAPTSSTTASLAMGDALAVALLDARGFTADDFARSHPAGSLGRRLLLHITDVMHGGDELPRVREDASLSEALMEMSRKR
LGMTAVVDAQERLIGLFTDGDLRRALDSDIDVRSAGIAEVMTRNPKTIGADQLAAEAARLMEDYKINGLIVVDAQQRAVG
ALNIHDLLRAKVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsF CAE85210.1 KpsF protein Virulence PAI V 536 Protein 3e-57 47
kpsF AAZ04466.1 polysialic capsule transport protein Virulence PAI I APEC-O1 Protein 6e-57 47
kpsF YP_854329.1 polysialic acid capsule synthesis protein KpsF Not tested PAI I APEC-O1 Protein 6e-57 47