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Name : Rpic_5033 (Rpic_5033) Accession : YP_001901393.1 Strain : Genome accession: NC_010683 Putative virulence/resistance : Virulence Product : lytic transglycosylase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0741 EC number : - Position : 77525 - 77962 bp Length : 438 bp Strand : - Note : PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic DNA sequence : ATGAAACGCCTCGGCCCGATTCTGCTACTGGTTCTGTCGCTGTCGTCTCCAGCTGCCCACGCAGATTGCCTGGACGACGC AGCGGCGTACCACCGCGTCGATGGCGCGCTCCTGCGCAGCATCGCGCTGCATGAATCGCACATGAATCCTCTGGCCATCA ATCGAAATCGTGATGGCTCGCAGGACCTGGGCCTTATGCAAATCAATTCCGCGCATCTGCCACGGTTGGCCCGCTATGGC ATCACGCGGCAGCAGCTGCTCGACGCTTGCATCAATGCGTATGTGGGCGCTTGGATCTTGCGCGCCAACATCGACCGGTT TGGCGCGACATGGCGCGCGGTTGGCGCCTACAACGCGACGACACCCGCCAAGCAGCTCAGATATGCCAATCAGATCTACA CGCGGTGGCAATCGCTGCAGCGCGCAGCATTGCCTTGA Protein sequence : MKRLGPILLLVLSLSSPAAHADCLDDAAAYHRVDGALLRSIALHESHMNPLAINRNRDGSQDLGLMQINSAHLPRLARYG ITRQQLLDACINAYVGAWILRANIDRFGATWRAVGAYNATTPAKQLRYANQIYTRWQSLQRAALP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3001 | YP_244069.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 7e-22 | 50 |
| hpa2 | NP_636615.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 7e-22 | 50 |
| iagB | NP_461798.1 | invasion protein precursor | Virulence | SPI-1 | Protein | 2e-16 | 50 |
| iagB | YP_217796.1 | cell invasion protein | Virulence | SPI-1 | Protein | 2e-16 | 50 |
| iagB | NP_457271.1 | cell invasion protein | Virulence | SPI-1 | Protein | 1e-16 | 50 |
| iagB | NP_806480.1 | cell invasion protein | Virulence | SPI-1 | Protein | 1e-16 | 50 |
| hpa2 | NP_640772.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 3e-21 | 48 |
| ECO103_3629 | YP_003223486.1 | hypothetical protein | Not tested | LEE | Protein | 1e-12 | 43 |
| ECO26_5260 | YP_003232142.1 | hypothetical protein | Not tested | LEE | Protein | 1e-12 | 43 |
| unnamed | AAK26704.1 | unknown | Not tested | LEE | Protein | 7e-13 | 43 |
| st13 | CAC81851.1 | ST13 protein | Not tested | LEE II | Protein | 7e-13 | 43 |
| unnamed | CAI43885.1 | hypothetical protein | Not tested | LEE | Protein | 7e-13 | 43 |
| unnamed | AAL57531.1 | unknown | Not tested | LEE | Protein | 7e-13 | 43 |
| ECs4579 | NP_312606.1 | hypothetical protein | Not tested | LEE | Protein | 1e-12 | 42 |
| unnamed | AAC31524.1 | L0045 | Not tested | LEE | Protein | 9e-13 | 42 |
| unnamed | ACU09469.1 | putative lytic transglycosylase | Not tested | LEE | Protein | 9e-13 | 42 |
| Z5131 | NP_290279.1 | hypothetical protein | Not tested | LEE | Protein | 1e-12 | 42 |
| unnamed | AAL06358.1 | unknown | Not tested | LEE | Protein | 1e-12 | 42 |
| unnamed | AAC38373.1 | rOrf3 | Not tested | LEE | Protein | 4e-12 | 41 |
| ECO111_3763 | YP_003236099.1 | hypothetical protein | Not tested | LEE | Protein | 2e-12 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic_5033 | YP_001901393.1 | lytic transglycosylase | VFG0539 | Protein | 5e-17 | 50 |
| Rpic_5033 | YP_001901393.1 | lytic transglycosylase | VFG0823 | Protein | 3e-13 | 42 |
| Rpic_5033 | YP_001901393.1 | lytic transglycosylase | VFG0719 | Protein | 2e-12 | 41 |
