Gene Information

Name : Rpic_5017 (Rpic_5017)
Accession : YP_001901377.1
Strain :
Genome accession: NC_010683
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 64265 - 64816 bp
Length : 552 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bvi:Bcep1808_1339 lytic transglycosylase, catalytic

DNA sequence : 
ATGAAGGGCTCTGCATTCCTGCTCGTCATGGCGCTATTGCCGGCGCTGGCCTTTGCCGACTGTATTGACGAAGCCGCCAG
GTTCCACCAGGTCGATGCGCGCTTGGTGCGCGCCATCGCCCAGGTGGAGTCGCGGATGCACGCGGACGCCGTTGGCGCCA
ACAGCGATGGCAGTACCGACATCGGTCTCATGCAGATCAACTCAAGCTGGCTACCCAGCCTGGCGCGCTATGGCATCACC
CGAGCGCATCTGTTTGATGCTTGTGTCAACGCCTACGTAGGAAGTTGGATTCTGTCTCGCAATATCCAGCAGCTCGGCCT
CACGTGGGATGCCGTCGGGGCCTACAACGCCAAGAGCCCGGCAAAGCGTCTCGCCTACGCGCAAAAGGTCTATCAGGCGT
TGGCGACGGCCAGCTCTACGCCGAGCCGCGCAATTGCCAACCCAGTAGCCTCAGTACGGCCTGTGGAGGCGCCGCGTGCT
GCTGCGCGCCGCCGGCAGACGAACACGTCATCGGACATCACCATCGTCTCCTGGGAGCCACCCAATGAATGA

Protein sequence : 
MKGSAFLLVMALLPALAFADCIDEAARFHQVDARLVRAIAQVESRMHADAVGANSDGSTDIGLMQINSSWLPSLARYGIT
RAHLFDACVNAYVGSWILSRNIQQLGLTWDAVGAYNAKSPAKRLAYAQKVYQALATASSTPSRAIANPVASVRPVEAPRA
AARRRQTNTSSDITIVSWEPPNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 1e-14 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-14 42
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-14 42
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 1e-14 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_5017 YP_001901377.1 lytic transglycosylase VFG0539 Protein 6e-15 42