Gene Information

Name : Rpic_0575 (Rpic_0575)
Accession : YP_001898158.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 608078 - 608752 bp
Length : 675 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_5866 two component transcriptional regulator, winged helix family

DNA sequence : 
GTGCGCATCCTGCTTGTCGAAGACGACCCCCTGCTCGGAGACGGCATTCGTGCGGGCCTGCAGCAGCAGGGCTTCCAGGT
CGATTGGGTGCGCGACGGCGAGGCAGCGTGGCGGGAGTTGCGCACGGACGCCTACGTCGCCGCAATACTCGACCTTGGGC
TGCCCCGCATGGACGGCGTGGACGTGCTGCGAAAGGTGCGTGGCGCAGGCATTGCGGTCCCCATCCTGGTGTTGACCGCG
CGCGACGCGATACCAGATCGCGTGCGTGGTCTCGATCTCGGCGCCGATGATTACATCGTCAAGCCCATTGATCTGCACGA
ACTCAGCGCGAGACTGCGCGCGCTGGTGCGCCGCGCGCATGGTCATCCCACGGAGCAGTTGAGGGCGCGCGGCATTGTTC
TGGAGCCGGCGTCACGCACGGTCTTCTGCAACGGTCGAGCCGTCGCACTGTCGACGCGGGAATTTGACCTGCTGCATGCC
TTGATGCTGAACGCGGGGCGCGTGCTGTCACGTGAGCAGCTCGAGCAGTGCCTATACCCCTGGGGGCAGGAAGTCGGAAG
CAACTCCGTGGAGGTGCATATCCATCATCTGCGCGTCAAACTTGGCAGCGACCTCATCGTGACCGTGCGCGGCGTCGGCT
ATATGCTGCCGCGTGACAATGCCGAAGCGCCATGA

Protein sequence : 
MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGEAAWRELRTDAYVAAILDLGLPRMDGVDVLRKVRGAGIAVPILVLTA
RDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAHGHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHA
LMLNAGRVLSREQLEQCLYPWGQEVGSNSVEVHIHHLRVKLGSDLIVTVRGVGYMLPRDNAEAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-34 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator BAC0487 Protein 5e-31 43
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator BAC0197 Protein 3e-29 42
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-24 41
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator VFG0473 Protein 8e-36 44
Rpic_0575 YP_001898158.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-28 43