Gene Information

Name : Rpic_3626 (Rpic_3626)
Accession : YP_001901177.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3793970 - 3794635 bp
Length : 666 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc3404 probable response regulator transcription regulator protein

DNA sequence : 
ATGCGAGTCCTCCTAGTTGAAGACGACCCGATGATTGGCGCGGCCGTGGAAGCCGCGCTGCAGGACGCCGCCTACGCGGT
GGACTGGGTGCGTAACGGTCAGACCGCGTTGGATGTGGCCGCGCACCAACACTACGACCTGCTGCTGCTCGATCTCGGCC
TGCCCGGAAAGGACGGCCATGCAGTGCTCGGCAGCCTGCGCGCCCGCGACAATCCTGTCCCGGTGCTGATCCTGACCGCG
CGCGATGCGGTGGATGAGCGCGTACGCGGTCTCGACGGCGGCGCCGATGACTACATCCTCAAGCCCTTCGAGATGGTTGA
ACTGCTCGCCCGCATGCGCGCCGTCCTGCGCCGCAAGGGTGGGGCAGCGAGCCCCGTGCTCACCAATGGCGTGCTGACGC
TCGATCCCGCCGCGCACGAAGCGCGCATGGGCGATGCCGAGCCGGTACGCCTGTCCGCGCGCGAGTTTGCATTGCTGCAA
GCGCTCATGCTGCGGCCGGGCGCCATCCTTTCGCGCACGGAGCTGGAAGAGCGTATCTACGGCTGGGGCCACGAGGTAGC
GAGCAACGCGGTCGAATTCCTCATCCACGCACTGCGCAAAAAGCTCGGCGCGCAGGCCATCAAGAACGTCAGGGGAGTGG
GATGGATGGTGCCGAGGGGCCAATGA

Protein sequence : 
MRVLLVEDDPMIGAAVEAALQDAAYAVDWVRNGQTALDVAAHQHYDLLLLDLGLPGKDGHAVLGSLRARDNPVPVLILTA
RDAVDERVRGLDGGADDYILKPFEMVELLARMRAVLRRKGGAASPVLTNGVLTLDPAAHEARMGDAEPVRLSAREFALLQ
ALMLRPGAILSRTELEERIYGWGHEVASNAVEFLIHALRKKLGAQAIKNVRGVGWMVPRGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-31 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_3626 YP_001901177.1 winged helix family two component transcriptional regulator BAC0197 Protein 6e-31 44
Rpic_3626 YP_001901177.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-31 42
Rpic_3626 YP_001901177.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_3626 YP_001901177.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-34 44
Rpic_3626 YP_001901177.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-26 41