Gene Information

Name : Rpic_3401 (Rpic_3401)
Accession : YP_001900954.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : general secretion pathway protein F
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 3561197 - 3562408 bp
Length : 1212 bp
Strand : +
Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rso:RSc3116 probable general secretory pathway F transmembrane protein

DNA sequence : 
ATGCCAGCCTTCCGCTACGAAGCCGCCGACGCCACCGGCAAGACCGACAAGGGTGTCATCGAAGCCGACAGCGCACGCCA
GGCGCGCACGCTGCTGCGCGCACGCGGGCTGACGCCGCTGCTGGTCGACGCGCTGGGCGCGCAGGCCACGAAGCGCAGCG
GGTCCACCTTCGGCAAGCGGCTATCGGCGCAGGAAAACGCGCTCGTCACGCGCCAGCTCGCCAGCCTGCTGGTGGCGGGC
CTGCCGCTCGATGAGGCGCTGGCCGCGCTGGCTGATCAGGCCGAACGCGCGTACGTCGGTGAACTGCTCGCCGCCATCCG
CGCGGAAGTGCTGGGCGGCAGCTCGTTGTCGGTGGCGCTGGCGCAGCATCCGAAGGATTTTCCCGACATCTACCGTGCCC
TCGTATCAGCGGGGGAGCACTCGGGCAACCTCGGGCTCGTGCTGTCACGCCTGGCCGACTACATCGAAAGCCGCAACGCG
CTCACATCGAAGATCAAGCTGGCCTTCACGTACCCCGCCATCGTCACGGTGGTGGCGTTTGCGATTGTGATCTTTCTGCT
GTCGTACGTGGTGCCGCAGGTGGTCAGCGTGTTTGCCAACACCAAGCAGAAGCTGCCGACGCTCACGATCATCATGCTGT
GGCTGTCGGACTTTGTGCGGAACTGGGGCTGGCTGGCGGCGATCGTGCTGGTGGCGATCGGCGTGCTGATCCGCAATCTG
CTCAAACAGCCGGCGTTGCGGTTGTCGTGGCACAAGTGGCTGCTGACTGCGCCGCTGTTCGGCAAGCTCGTTCGCGGCTA
CAACACCGCGCGGTTTGCGAGCACGCTGGCGATTCTGACCAGTGCCGGTGTGCCGATTCTGCGTGGGTTGCAGGCAGCGG
GTGAGACGCTGAACAACGTTGCGCTGAAGACCAATGTTGAAGATGCGTCCACGCGCGTGCGCGAAGGGACTTCGCTGGCG
CGGGCGTTGGCGGCGCAGAACCAGTTTCCGCCTGTGCTGGTGCACCTGATCCGCTCGGGTGAGGCGACGGGGAATCTGCC
TGCGATGTTGGAGCGGGCTGCGCAAGGAGAAGCGCAAGAACTGGAGCGTCGGACGTTGTTCCTTACTGGCTTGCTGGAGC
CGGCGCTGATTTTGACGATGGGTGTGGTGGTGTTGCTGATTGTGTTGGCGGTGTTGATGCCGATTATCGAGATTAATCAG
TTGGTGCACTGA

Protein sequence : 
MPAFRYEAADATGKTDKGVIEADSARQARTLLRARGLTPLLVDALGAQATKRSGSTFGKRLSAQENALVTRQLASLLVAG
LPLDEALAALADQAERAYVGELLAAIRAEVLGGSSLSVALAQHPKDFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNA
LTSKIKLAFTYPAIVTVVAFAIVIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWLSDFVRNWGWLAAIVLVAIGVLIRNL
LKQPALRLSWHKWLLTAPLFGKLVRGYNTARFASTLAILTSAGVPILRGLQAAGETLNNVALKTNVEDASTRVREGTSLA
RALAAQNQFPPVLVHLIRSGEATGNLPAMLERAAQGEAQELERRTLFLTGLLEPALILTMGVVVLLIVLAVLMPIIEINQ
LVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 2e-48 41
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 8e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_3401 YP_001900954.1 general secretion pathway protein F VFG0181 Protein 3e-72 49
Rpic_3401 YP_001900954.1 general secretion pathway protein F VFG1870 Protein 5e-59 41