Gene Information

Name : Rpic_3322 (Rpic_3322)
Accession : YP_001900876.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 3471147 - 3472676 bp
Length : 1530 bp
Strand : -
Note : PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family

DNA sequence :
ATGAACCTACCCACCAACCTCGATGCCCTGAGCCCGGACGAACTGCGCACACTGGCTGCGCAGTTGATGGCCCAGGTCGG
CGAGAAGGACCGGGAGTTGCGGTACCGGCAAGCCAAGATCGACCAGCTCACACACGAGCTGGCCATCCACAAGCGCTGGA
AGTTCGGCAAGCGCAGCGAGCAACTGACATCTGAACAGGCGAGTCTGCTGGACGAAGCCATTGACGCAGACCTCGAGGCG
ATTGAGACCGAACTGGAAGCGCTCCTGCCGTCGTCCAAATCTGAAGCCAAGAGCAAGCCCAAGCGCCAGGCATTGCCGCC
GCAGTTGCCGCGCACCGACATCCACCACGAGCCGGACGCAGAGACCTGCACCTGTGGGTGTGCGCTCAAGCGCATTGGCG
AAGACATCAGCGAGAAGCTGGACTACACGCCGGGCACGTTCACCGTGGAGCGTCACATCCGCGGCAAATGGGTGTGCGAT
CAGTGTGAGACGCTGGTGCAGACGCCGGTGCCACCCCACGTCATCGACAAAGGCATCCCGACGGCCGGACTGCTGGCACA
TACGCTGGTGTCCAAGTTCGGCGACCACCTTCCCCTGTATCGGCAGGAGCGCATCTATGCGCGCGCCGGTCTGGCCATCC
CGCAATCGACACTGGGCGCGTGGGTGGGCATCTGTGGCGTGCGTCTGCAACCGCTGGTGGACGCCCTGCAAGAAGAGGTT
CTGAGCCACGGTGTTCTGCACGCCGACGAAACGCCAGTGCAGATGCTCGCGCCCGGCAATGGCAAGACGCACCGCGCCTA
CCTGTGGGCCTATGCGCCGAGCGAGTTCGAGAAGATGCGCGCGGTGATTTACCAGTTTGCGCCCAGCCGCAGCGGCGAGC
ACGCTCGCGCGTTCCTGGGGCAGTGGCAAGGCAAGCTGGTATGTGATGACTTCGCCGGCTACAAGGCCAGCTTCGACGGT
GGCGTCACTGAGATCGGTTGCATGGCCCATTCGCGGCGCAAGTTCTTTGAACTGCACGACAAGCACAAGAGCGAATTGGC
GGGCCAGGCACTGCGCTACATGGTGAGCTTGTACGAGATCGAGGCGCAAGTGCGGGATGCTGAGCCAGACCAGCGCCTGG
CAGCGCGGCAACAAAGGGCTGGCCCGATTCTAGAGCGGCTGCACGCCTGGCTCGAGGAACAGCGACGCCGCGTCCCAGAC
GGCTCGGCGATCGCGCGGGCCATTGACTACAGCCTCAAGCGGTGGCCGGCTCTCGTGCGTTACCTCGACGACCCGACGGT
GCCCATCGACAACAACCACGTCGAGCGACAGATCCGGCCGGTTGCCCTGGGTCGCTCCAATTGGTTGTTTGCAGGCTCAC
TGCGCGCCGGTCAACGCGCGGCTGCCGTCATGAGCCTGATCCAATCGGCCAAGCTCAACGGGCACGATCCCTACGCCTAT
CTGAAAGACGTCCTCACGCGACTGCCGACCCACAAGGCGGCCGACATCGCCGAACTGCTCCCGCATCGCTGGACGCCCAG
CGCCACCTAG

Protein sequence :
MNLPTNLDALSPDELRTLAAQLMAQVGEKDRELRYRQAKIDQLTHELAIHKRWKFGKRSEQLTSEQASLLDEAIDADLEA
IETELEALLPSSKSEAKSKPKRQALPPQLPRTDIHHEPDAETCTCGCALKRIGEDISEKLDYTPGTFTVERHIRGKWVCD
QCETLVQTPVPPHVIDKGIPTAGLLAHTLVSKFGDHLPLYRQERIYARAGLAIPQSTLGAWVGICGVRLQPLVDALQEEV
LSHGVLHADETPVQMLAPGNGKTHRAYLWAYAPSEFEKMRAVIYQFAPSRSGEHARAFLGQWQGKLVCDDFAGYKASFDG
GVTEIGCMAHSRRKFFELHDKHKSELAGQALRYMVSLYEIEAQVRDAEPDQRLAARQQRAGPILERLHAWLEEQRRRVPD
GSAIARAIDYSLKRWPALVRYLDDPTVPIDNNHVERQIRPVALGRSNWLFAGSLRAGQRAAAVMSLIQSAKLNGHDPYAY
LKDVLTRLPTHKAADIAELLPHRWTPSAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 5e-156 65
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 7e-131 55
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-69 42
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 5e-77 42
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 8e-70 42
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 4e-85 41
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_3322 YP_001900876.1 transposase IS66 VFG1700 Protein 4e-70 42