|
Name : Rpic_3070 (Rpic_3070) Accession : YP_001900625.1 Strain : Genome accession: NC_010682 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3204581 - 3206308 bp Length : 1728 bp Strand : + Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: rso:RSc2825 probable type IV pilus assembly protein DNA sequence : ATGACACTCGGACTTGCTCTAGCGCAGAGCCGGCGGATCGCGCCGACGCTACTTACCCAACTCGAACAGAGCGCGCGTGA AAAACGCACGCAACTGATCGACGAACTGGTGGGCAGCGGGATCATGAGTGCGCACGACCTCGCCGTGTTTGTGGCCGGCA AGTACCAGATGCCGCTGCTCGACCTTGCGCAGTACAAGCTCGACACCGTGCCGGCCGTGCTGTCGGCCAACAAGCACTTT GCCCAGTTGCGCCTGTTGCCGCTGGGCCGTCGCGAGAACCGCCTCATCCTCGCCACGTCCGACCCGAGCGATCCGAAGCC GATCGAAGAGCTGCGTCAGAAGATGAACGTAGCCATCGAAACGGTCATCGTCGAACACGACAAGCTGGTTCGCCAACTCA GCCTCGCCAATGAGGCGCCGGCCGAGATCAAGTCGCTCTTCCCCAAGCAGGAGGCCACGCAGATCGAATACGATGCGGGC GCTGCCGCCGCCACGCGTCGCACCACCCCCGACGGCATCGACGATGCCCCTGTGGTGCGCTTCCTGCAGAAGCTCTTTAC CGAAGCCTTGCTGCGCGGCGCATCGGACTTGCATTTCGAGCCCTTTGAAACGTTTTACCGCGTACGTTTCCGCATCGACG GCATCCTCGCGCAGGTCGCGCAGCCGCCGCTGGATATCCGCGACAAGATCGCGACCCGCATCAAGGTGCTCTCGCGCCTG GACATCTCGGAAAAGCGCGTGCCGCAAGACGGCCGCATGAAGCTGCTCATCACCGTCCCGAAAGACCGCAAGGACAAGGA CAACAAAGAGACGATCGAGCGCGCCATCGACTTCCGGGTGTCGACGCTGCCGACGCTGTTCGGCGAAAAGATCGTGATCC GGATTCTGGAGTCGTCCACCGAGCGGCTCGATATCGACCAGCTTGGCTATGAGCCGGAGCAAAAGCAGTTGCTGCTCGAC GTAATCAAGCGGCCGTACGGCATGGTGCTGGTGACGGGGCCAACCGGATCGGGCAAAACCGTGTCGCTGTACACGTTCCT GAACAGGCTGAACCAGGGCGACATCAATATCTCCACCGCCGAAGACCCAGCGGAAATCCAGTTGCCCGGCATCAACCAGG TCAACGTGAACGACAAGGCTGGGCTGACCTTTGCGGCGGCGCTGAAGTCGTTCCTGCGGCAGGATCCGGACATCATCATG GTGGGCGAAATCCGAGATCTGGAGACGGCCGACATCTCGATCAAGGCTGCGCAGACCGGTCACCTGGTGTTTTCCACGCT GCACACCAACGACGCACCGACCACACTGACCCGCCTGATGAACATGGGGGTGGCGCCGTTCAACATCGCGTCGTCGGTGC TGATGATCACGGCGCAGCGTCTGGGGCGCCGGCTGTGCAAGGATTGCAAGAAGCCGGGTCCGCTGCCCAAGGAAACGCTG CTCGACGCGGGTTTTACCGAAGCGGACCTCGACGGCTCCTGGCAGCCGTATCACCCGGTCGGTTGCGAAACCTGCAACGG CAGCGGCTACAAGGGCCGGGTCGGCATCTACCAGGTCATGCCGATTACCGAGGCGATCCAGGAAATCATTCTCACGCATG GCACGGCGCTGCAGATTGCCGAGCAGGCGCGCAAAGACGGCGTGATGTCGCTACGCGAATCGGGCCTGCGAAAAGTGAAG CAGGGGCTGACTTCCCTCGAGGAAGTGCTGGCCACAACGAACCAATAA Protein sequence : MTLGLALAQSRRIAPTLLTQLEQSAREKRTQLIDELVGSGIMSAHDLAVFVAGKYQMPLLDLAQYKLDTVPAVLSANKHF AQLRLLPLGRRENRLILATSDPSDPKPIEELRQKMNVAIETVIVEHDKLVRQLSLANEAPAEIKSLFPKQEATQIEYDAG AAAATRRTTPDGIDDAPVVRFLQKLFTEALLRGASDLHFEPFETFYRVRFRIDGILAQVAQPPLDIRDKIATRIKVLSRL DISEKRVPQDGRMKLLITVPKDRKDKDNKETIERAIDFRVSTLPTLFGEKIVIRILESSTERLDIDQLGYEPEQKQLLLD VIKRPYGMVLVTGPTGSGKTVSLYTFLNRLNQGDINISTAEDPAEIQLPGINQVNVNDKAGLTFAAALKSFLRQDPDIIM VGEIRDLETADISIKAAQTGHLVFSTLHTNDAPTTLTRLMNMGVAPFNIASSVLMITAQRLGRRLCKDCKKPGPLPKETL LDAGFTEADLDGSWQPYHPVGCETCNGSGYKGRVGIYQVMPITEAIQEIILTHGTALQIAEQARKDGVMSLRESGLRKVK QGLTSLEEVLATTNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-78 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 2e-132 | 54 |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG2426 | Protein | 3e-106 | 52 |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 6e-127 | 51 |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 2e-118 | 48 |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 8e-78 | 45 |
| Rpic_3070 | YP_001900625.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 3e-77 | 43 |
