Gene Information

Name : Rpic_1780 (Rpic_1780)
Accession : YP_001899350.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : winged helix family two component heavy metal response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1877879 - 1878565 bp
Length : 687 bp
Strand : +
Note : TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein

DNA sequence :
ATGAAGCTGTTAGTCGTCGAGGACGAACCCAAGACCGGAGAGTACCTGCAGCAAGGCCTGACTGAAGCCGGCTTCGTGGT
AGATCTGGCCTGCAACGGCACTGACGGCCGGCATCTGGCTATGACCGGTGAGTACGACTTACTGGTGCTGGATGTGATGT
TGCCGGACGTCGATGGTTGGCAGATCGTCCAATCGTTGCGAGCCTCGGAACAAGCAGTGCCGGTGCTGTTCCTGACCGCG
CGCGACAGCGTGGCAGACCGCGTCAAAGGACTCGAACTGGGTGCTGACGACTACCTGGTGAAGCCGTTCGCGTTTGCCGA
GCTGCTGGCGCGGGTTCGCACGCTGCTGCGCCGCGGAAACAGCGCGGTCACTGCCGACCGCATCCAGGTGGCCGATCTGG
TGCTGGATCTTGCCCGCCGCCGCGCGTCGCGCGGTGGCCAGAAAATCCCGCTGACGAGCAAGGAGTTCTCGCTGCTCGAG
CTGCTGGTTCGGCGCCGTGGCGAAGTCCTGCCGCGCTCGCTGATCGCCTCTCAGGTCTGGGACATGAACTTCGACAGCGA
CACCAACGTGATCGACGTCGCCATCCGCCGCCTGCGCGCAAAGATCGATGATCACTTCGAGCCGAAGCTGATCCAAACGG
TGCGCGGCATGGGTTATGTGCTCGAAGCACCCGAGGAAGTGGCTTGA

Protein sequence :
MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGWQIVQSLRASEQAVPVLFLTA
RDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNSAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLE
LLVRRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLEAPEEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-49 61
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-48 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0083 Protein 2e-62 71
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0111 Protein 3e-65 71
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0638 Protein 5e-60 70
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0347 Protein 2e-55 66
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0308 Protein 5e-55 66
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0197 Protein 2e-55 65
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0125 Protein 6e-54 65
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator BAC0487 Protein 1e-23 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_010079.5776364.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_002952.2859858.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_007622.3794948.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_003923.1003417.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_013450.8614146.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_002951.3238224.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_007793.3914065.p0 Protein 3e-26 41
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator NC_002758.1121390.p0 Protein 3e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator VFG0596 Protein 5e-50 61
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator VFG1389 Protein 6e-28 46
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator VFG1390 Protein 1e-33 45
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator VFG0473 Protein 8e-27 42
Rpic_1780 YP_001899350.1 winged helix family two component heavy metal response transcriptional regulator VFG1386 Protein 2e-25 42