Gene Information

Name : Rpic_1531 (Rpic_1531)
Accession : YP_001899102.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : lytic transglycosylase catalytic subunit
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 1623970 - 1624446 bp
Length : 477 bp
Strand : +
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic

DNA sequence : 
ATGAGCGGATCACGACTCCGAGTGCGAGACGTGAGCGGTGCGAAAAGGCTGTTCGCTTTTTTCGCACTTCTGCTGGCTCT
TGCCAGTTTAGCGCGGGCGGATTGTCTCGACGACGCGGCCAATTACTACCGGCTCGATCCGACGCTCGTTCGCGCCATCG
CGTGGCACGAGTCCGGCATGCGGCCGCTTGCTGTCAATCGCAACTCTAACGGCAGTGTTGACGTTGGCCTCATGCAGATC
AACTCCTCCTGGTTTCCGACGCTGGCGCGTGTGGGCATTGCCCCTGAGCACTTGTGGAATCCCTGTGTTAACGCCTACGT
CGGGGCGTGGATTCTGAGCTCGAACATCGCGCGCCTGGGGCCGAACTGGAAAGCCGTCGGCGCATACAACGCCACTTCAC
CGGACAAGCAGTTGCGCTACGCCAACCAAATCTACGCGCGCTGGCAGGCATTGCAGCGCGCTGGTGCCAGTCATTGA

Protein sequence : 
MSGSRLRVRDVSGAKRLFAFFALLLALASLARADCLDDAANYYRLDPTLVRAIAWHESGMRPLAVNRNSNGSVDVGLMQI
NSSWFPTLARVGIAPEHLWNPCVNAYVGAWILSSNIARLGPNWKAVGAYNATSPDKQLRYANQIYARWQALQRAGASH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 1e-13 41
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 3e-13 41
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-12 41
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 1e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_1531 YP_001899102.1 lytic transglycosylase catalytic subunit VFG0719 Protein 1e-13 41
Rpic_1531 YP_001899102.1 lytic transglycosylase catalytic subunit VFG0994 Protein 8e-11 41
Rpic_1531 YP_001899102.1 lytic transglycosylase catalytic subunit VFG0539 Protein 4e-13 41