Gene Information

Name : Rpic_1152 (Rpic_1152)
Accession : YP_001898730.1
Strain :
Genome accession: NC_010682
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1234033 - 1234686 bp
Length : 654 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I1335 BexA

DNA sequence : 
ATGATCGAATTGGCGAATCTCTCCAAGATCTACCATACCCGTCAGGGTCGGCGCACTGTTCTGGACGGGATCAACCTGCG
CGTCGCCAAGGGAGAAAAGATTGGTGTTCTCGGCCGCAATGGCGCCGGGAAATCCACGATGATTCGCATGATCAGCGGTG
CGGAACTTCCCTCTGCAGGTAAGATTCGCCGCGGCATGAGTGTGTCCTGGCCCCTGGCATTTGGTGGCGCATTCCAAGGT
AGTCTGACCGGCATGGACAATCTGCGCTTCATCTGCCGGGTGTACGGCAGCGATGCCAAAGCGGCAGAACCGTTCGTGCA
AGAGTTCTCCGAATTGGGGTACTACCTGCGTGAGCCGGTAAAAACCTATTCGGCAGGCATGCGAGCCAGGCTGGCGTTCG
CCATTTCCATGGCCATTGAGTTCGACTGCTTTTTGATTGATGAAATCATCGCGGTGGGCGATAGCCGGTTCCATAGCAAA
TGCCACCGCGAACTATTCGAAAAGCGCCGCGACCGTTCGCTGATCATCGTCAGCCATGACGCCGGCTATATTCGCGAACA
CTGCGACAGCGCGGCCGTCCTGGTGCAGGGCAAGCTGCATACCTTCGAACAAGTCGACGACGCATATGCCTTCTACCAGG
AAAGCGTTGGCTAA

Protein sequence : 
MIELANLSKIYHTRQGRRTVLDGINLRVAKGEKIGVLGRNGAGKSTMIRMISGAELPSAGKIRRGMSVSWPLAFGGAFQG
SLTGMDNLRFICRVYGSDAKAAEPFVQEFSELGYYLREPVKTYSAGMRARLAFAISMAIEFDCFLIDEIIAVGDSRFHSK
CHRELFEKRRDRSLIIVSHDAGYIREHCDSAAVLVQGKLHTFEQVDDAYAFYQESVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 5e-68 64
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-43 46
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic_1152 YP_001898730.1 ABC transporter-like protein VFG2563 Protein 1e-71 67
Rpic_1152 YP_001898730.1 ABC transporter-like protein VFG0258 Protein 2e-68 64
Rpic_1152 YP_001898730.1 ABC transporter-like protein VFG0696 Protein 9e-68 63
Rpic_1152 YP_001898730.1 ABC transporter-like protein VFG1449 Protein 8e-44 46