|
Name : Rpic_3862 (Rpic_3862) Accession : YP_001892403.1 Strain : Genome accession: NC_010678 Putative virulence/resistance : Unknown Product : Fis family proprionate catabolism activator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 114117 - 116063 bp Length : 1947 bp Strand : + Note : KEGG: rso:RSp0123 propionate catabolism operon regulatory transcription regulator protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate ca DNA sequence : ATGAGCCCCACTGCACCCGACCTGACCGACCGCCCCCGCATCTGGGCTTGCGGCATCAGCCGCCTGAGCGATCTCTTCCT CGATATTGCCGCCGAGTACAACGACCGCGCCGAGCTGCGCGTCATCACACGCGGCTTTGAAGACATCGTGCGCGAGATCG ACGCCGCTGGCGCCGAGCGGCCCGACGTGGTGGTGGCGGGCGGCTCCAACGGCGCCTACCTGAAGCCGCGTCTGTCGCTG CCGGTGGTCGTCATCAACCCGACGGGCTTTGACGTGATGCATGCGCTGGCCCGCGCCCGGCGCGACGCGGAATCGGTGGC GCTCGTCACCCACGGCGACACGCCCGAGGAGGTGCGCCGCTTTGTCGCCGCCTATGGCATGGACGTGGTGTTTGCCTCGT ACACCTCGCGCCAGGGCGCGGAGAGTTGCGTGCTGGACCTGCGCGACCGCGGCGTGGGTGTGGTGGTTGGCCCCGGTCTG GTGACGGACCTGGCAACGCAGGCGGGCATGAACGCCGTGTTCCTGTATTCGCGGGACTCTGTGCGTGCGGCATTCGATAC CGCGCTGGAAGTCGTACAGGCCACGCGCCGCGAAACCCTGCGCCGCCAGCGGTTGGACAACCTGCTGCAGCATCTGCGTG ACGGTGTGGTCGCGCTGGATGCGCAGGGTCGCGTGGAGGCCATCAACCAGCGGCTGGCCACGGCGTTGGGCATCGAGGCC AAGCAGGCCATCGGGCAACCGCTGCTCAGCATTGCGCCCAACCTGCTCGGCTTGCTGCCCGATACCGACGGCGACACGCT GGGCACCGTGCAGGGCGTGAACTACGTCATCCACCGTGGCCCGCTCACGAGCACCGGCACCGGCGCCGCAGAAGGCACGG TGTTCACCTTCCAGGAATCCCGCGCGGTGGAGCGGCTGGACCGCACGCTGCGCTCACGCCAGCGCCCGCAGCAGTTCAGC GCGCGCTATCGGCTCGAAGACCTGGTGGGCGAATCGCTGGCGATGGAACGCGTGCGTACGCTGATACGCCGCTATGCCAA ATCCGACGCCACCGTGCTCGTGCTGGGCGAATCCGGCACGGGCAAGGAGATGGTCGCGCAGGGGATGCATCAGCTCAGCG CGCGGCGCGATTTTCCATTCGTCGCCATCAACTGCGGCGCGTTTCCCGAAGCGCTGCTGGAAAGCGAACTGTTCGGCTAC GAAGAGGGCGCCTTCACCGGCGCGCGCAAGGGCGGCAAGACGGGGCTGATTGAAGCCGCGCACCGCGGCACACTGTTTCT CGATGAAATCGGCGAGATGCCGCTGCCGCTGCAAAGCCGCCTGCTGCGCGTATTGCAGGAGCGCGAGGTGGTGCGGCTGG GTTCCACCGAGCCCACCCGCGTCGATATTCGCGTGGTGGCCGCCACGCATCGCGCGCTGACGGACGCCGTGCAAGCCGGC ACCTTCCGCGCGGACCTGTACTACCGCCTCAATATCCTCAGCATCGCGCTGCCCCCACTTCGCGAACGCCCCGACGACGT GATGCCCCTGGCCGTTGAACTGCTCGTGCAGGCCGCGCGCCGCGATCCGCGCCTGCTGCTGCGCATTGCCGACACGGAAG AGGCTGCCCGCGTGCTGGCCGGTGTTGCCGAGCCGCTGAGGCGCTACGCCTGGGCCGGCAATGTGCGCGAACTGCAGAGC GTGGTCGAGCGGATTGCCGTTGAACTGGCTTACACCGAAGACGCCAGCGCCATCACGCAAGACGTGCTGCGGCTGATTGC ACCCGAAGTGTTTGCCCACGCCACACCGGGCAAACCGGCGGTATTGACGCTGCGCGAGCGCAGCCGGGGCGTGGAAGCGG AAGAGATACGCGCAGCGCTGGCCGCCCACGGCGGCGATCGGGATGCCGTATGTGCCGCGTTGGGGATCAGCAAGACGACG TTGTGGCGGCGGCTGCAGATGGGCTAG Protein sequence : MSPTAPDLTDRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIVREIDAAGAERPDVVVAGGSNGAYLKPRLSL PVVVINPTGFDVMHALARARRDAESVALVTHGDTPEEVRRFVAAYGMDVVFASYTSRQGAESCVLDLRDRGVGVVVGPGL VTDLATQAGMNAVFLYSRDSVRAAFDTALEVVQATRRETLRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIEA KQAIGQPLLSIAPNLLGLLPDTDGDTLGTVQGVNYVIHRGPLTSTGTGAAEGTVFTFQESRAVERLDRTLRSRQRPQQFS ARYRLEDLVGESLAMERVRTLIRRYAKSDATVLVLGESGTGKEMVAQGMHQLSARRDFPFVAINCGAFPEALLESELFGY EEGAFTGARKGGKTGLIEAAHRGTLFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVQAG TFRADLYYRLNILSIALPPLRERPDDVMPLAVELLVQAARRDPRLLLRIADTEEAARVLAGVAEPLRRYAWAGNVRELQS VVERIAVELAYTEDASAITQDVLRLIAPEVFAHATPGKPAVLTLRERSRGVEAEEIRAALAAHGGDRDAVCAALGISKTT LWRRLQMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK01495.1 | propionate catabolism operon regulator prpR | Not tested | PAGI-1 | Protein | 1e-97 | 41 |
