Gene Information

Name : Bphyt_5212 (Bphyt_5212)
Accession : YP_001888941.1
Strain :
Genome accession: NC_010676
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1388748 - 1389395 bp
Length : 648 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGAAAGATCAAGTCGTCAACTTTCAGATAATCGTCTTTTTCTTCGTGCTGGGTCTGCTGCCGCTGATCGTGACGATGAC
CACGTCGTTCACCAAGTTCAGCATTGTGCTCACACTGTTGCGTTCTGCCGTGGGCGTGCAACAGGCGCCCGGCAACATGG
CGATCTCGGCGCTGGCGCTCGCGGCGACGCTGGTTGTAATGGCGCCGACAATGGAGAAGATCGGTGGCGATCTGTCGCTC
GGTGAGCGTGTCGAGCGCGGTCAGTTCCCCGACGTGACGGAGGTATACCAGGCGGTGCGCGGCCCACTCGGCGAATTCAT
GATGGAGCATTCGCGCCCCTCCGAGCGCGCGTTCCTCGTGACGGCGGCAAAACGCATCGACCCGGCACGCGACGCACAGG
AAACCGACTTCTCGCTGCTGATTCCCGCATTCATGATCAGCGAAATTTCCAGCGGGTTCGAGGCCGGGTTTCTCCTTTAT
ATGGCGTTTCTCATCATCGACCTCGTGATCGCTAACGTGTTGACGGCGATGGGCATGGTGATGTTGTCGCCCACCACGGT
ATCAACCCCGTTGAAACTCTTCGTGCTTGTGTCCGTATCAGGCATTTCGAAGCTAATGCACGGCTTGATTGTCAGCTACG
CAAAATGA

Protein sequence : 
MKDQVVNFQIIVFFFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMAPTMEKIGGDLSL
GERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDPARDAQETDFSLLIPAFMISEISSGFEAGFLLY
MAFLIIDLVIANVLTAMGMVMLSPTTVSTPLKLFVLVSVSGISKLMHGLIVSYAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-29 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-29 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-29 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-29 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-29 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-29 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-20 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-20 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-28 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-19 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-25 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-19 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-19 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-19 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-26 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bphyt_5212 YP_001888941.1 type III secretion system protein VFG0044 Protein 9e-35 44
Bphyt_5212 YP_001888941.1 type III secretion system protein VFG0394 Protein 6e-27 42
Bphyt_5212 YP_001888941.1 type III secretion system protein VFG1259 Protein 1e-23 41