Gene Information

Name : smpB (BH0033)
Accession : YP_001883478.1
Strain : Borrelia hermsii DAH
Genome accession: NC_010673
Putative virulence/resistance : Unknown
Product : SsrA-binding protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0691
EC number : -
Position : 30829 - 31278 bp
Length : 450 bp
Strand : +
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca

DNA sequence :
GTGAACTCATTACTACTTGAAAACAAAAAAGCAAGATTCAATTACTTCATTGAAGATAAAATAAGTTGTGGAATTGTTTT
AAAAGGAACTGAAGTTAAATCCATTAAATTAAAAAAATTTTCATTTAATGATAGTTTTGCCAGCATTAAAAAAGATGAAA
TATGGCTTGAAAATTTACATATAGCAAAGTATAAAGAAGGTAATATTTTCAATCACGAAGAAATAAGACACAGAAAACTT
CTTATAACAAAAAAAGAAATACAAAAGTTGAAAAAGTTTAAAGAAAAAGAAGGATACACATTAATTCCTATCTCGATTTA
TCTAAAAAATTCATTAATAAAAGTAGAACTTGGGATATGTAAAGGCAAAAAACTATTTGATAAACGAGAAATATTAAAAC
AGAAAAGCATAAAAAAAGATTTAAGTCGTGAAATTAAACAATATAAATAA

Protein sequence :
MNSLLLENKKARFNYFIEDKISCGIVLKGTEVKSIKLKKFSFNDSFASIKKDEIWLENLHIAKYKEGNIFNHEEIRHRKL
LITKKEIQKLKKFKEKEGYTLIPISIYLKNSLIKVELGICKGKKLFDKREILKQKSIKKDLSREIKQYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AET14351.1 SsrA-binding protein Not tested SaPI68111 Protein 2e-26 50