Gene Information

Name : SbBS512_A0042 (SbBS512_A0042)
Accession : YP_001883101.1
Strain :
Genome accession: NC_010660
Putative virulence/resistance : Unknown
Product : ISEc17, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 26000 - 26584 bp
Length : 585 bp
Strand : +
Note : identified by match to protein family HMM PF00665

DNA sequence : 
GTGAGCAAATTGATCTTACCCAGCAATACGGTCAGTTACCGCGCACATGGCCTGCCTGTGTCAGAAAATCTGCTGGAGCA
GGATTTTTACGCCAGTGGTCCGAACCAGAAGTGGGCGGGAGACATCACGTACTTACGTACAGATGAAGGCTGGCTGTATC
TGGCTGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCCATGTCACCACGCCTGACGGCGCAACTGGCCTGC
GATGCCCTGCAGATGGCGCTGTGGCGGCGTAAGAGACCCCGGAACGTTATCGTTCACTCGGACCGAGGAAGTCAGTACTG
TTCAGCAGATTATCAGGCGCTGCTGAAGTGGCATAATCTGCGTGGCAGTATGAGCGCAAAGGGCTGCTGCTACGATAATG
CCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTCTCCACGGAGAACACTTTATCAGCCGGGAAATAATGCGG
GCAACAGTGTTTAATTATATCGAATGTGATTACAATCGCTGGCGACGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACA
ATTTGAAAACCAGAACCTCGCTTAG

Protein sequence : 
MSKLILPSNTVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRLTAQLAC
DALQMALWRRKRPRNVIVHSDRGSQYCSADYQALLKWHNLRGSMSAKGCCYDNACVESFFHSLKVECLHGEHFISREIMR
ATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-26 45
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-26 45
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-26 44
unnamed AAC31485.1 L0006 Not tested LEE Protein 8e-27 44
Z5089 NP_290241.1 transposase Not tested LEE Protein 9e-27 44
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 6e-27 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-29 41
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_A0042 YP_001883101.1 ISEc17, transposase orfB VFG0785 Protein 3e-27 44