Gene Information

Name : ipgF (SbBS512_A0168)
Accession : YP_001883197.1
Strain :
Genome accession: NC_010660
Putative virulence/resistance : Virulence
Product : protein IpgF
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 113624 - 114082 bp
Length : 459 bp
Strand : +
Note : identified by match to protein family HMM PF01464

DNA sequence : 
ATGTCCCGTTTCGTATTTATTTTTCTGTGTTTTATCCCATATTTAGGGAGAGCTGATTGTTGGGATAAGGCTGGTGAAAG
GTACAACATTCCATCGAGTTTGTTAAAAGCGATTGCGGAAAAAGAATCCGGATTTAATAAATTTGCAGTCAATGTTAATA
ACAATGGAAGTAAAGATTATGGTATAATGCAAATAAATGACTTTCATTCTAAAAGACTTAGAGAAATGGGATATACTGAG
GAAATGCTAATTAGTCATCCATGTCTTTCTGTACATTATGCAGCAAAGTTATTAAATGAGTTTATGCTGATGTATGGAAG
AGGGTGGGAGGCTGTTGGTGCCTATAATGCAGGAACATCTCCGAAAAAGAAAAAAGAAAGATTAAAGTACGCAGAGGATA
TCTATAAACGCTATTTGCGGATAGCAGCAGAGAGCAAGCAGAATAATCGAAGGATATAA

Protein sequence : 
MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESGFNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTE
EMLISHPCLSVHYAAKLLNEFMLMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 2e-12 45
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 4e-25 44
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 4e-25 44
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 4e-25 44
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 4e-25 44
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 4e-12 43
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 7e-12 43
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 1e-11 43
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 4e-11 41
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 4e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ipgF YP_001883197.1 protein IpgF VFG0994 Protein 2e-66 97
ipgF YP_001883197.1 protein IpgF VFG0539 Protein 1e-25 44