Gene Information

Name : ipgC (SbBS512_A0161)
Accession : YP_001883190.1
Strain :
Genome accession: NC_010660
Putative virulence/resistance : Virulence
Product : chaperone protein IpgC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 108269 - 108736 bp
Length : 468 bp
Strand : -
Note : identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552

DNA sequence : 
ATGTCTTTAAATATCACTGAAAATGAAAGCATCTCTACTGCAGTAATTGATGCAATTAACTCTGGCGCTACACTGAAAGA
TATTAATGCAATTCCTGATGATATGATGGATGACATTTATTCATATGCTTATGACTTTTACAACAAAGGAAGAATAGAGG
AAGCTGAAGTTTTCTTCAGATTTTTATGTATATACGACTTTTACAATGTAGACTACATTATGGGACTCGCAGCTATTTAT
CAGATAAAAGAACAGTTCCAACAAGCAGCAGACCTTTATGCTGTCGCTTTTGCATTAGGAAAAAATGACTATACACCGGT
ATTCCATACTGGACAATGCCAGCTTCGGTTGAAAGCCCCCTTGAAAGCCAAAGAGTGCTTCGAACTCGTAATTCAACACA
GCAATGATGAAAAATTAAAAATAAAAGCACAATCATACTTAGACGCAATTCAGGATATCAAGGAGTAA

Protein sequence : 
MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY
QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-43 60
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 1e-43 60
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 1e-43 60
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 1e-43 60
sycB AAS66850.1 SycB Not tested SSR-1 Protein 2e-30 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ipgC YP_001883190.1 chaperone protein IpgC VFG0988 Protein 1e-67 100
ipgC YP_001883190.1 chaperone protein IpgC VFG0547 Protein 4e-44 60
ipgC YP_001883190.1 chaperone protein IpgC VFG2451 Protein 6e-44 51
ipgC YP_001883190.1 chaperone protein IpgC VFG1769 Protein 5e-36 48