Gene Information

Name : SbBS512_E0906 (SbBS512_E0906)
Accession : YP_001879595.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS66 family element, transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 846386 - 847978 bp
Length : 1593 bp
Strand : +
Note : identified by match to protein family HMM PF03050

DNA sequence :
ATGAATCAAAAATACCTCATTCGCATTGCAGAACTGGAATGCCAGCTCCGTCAGAAAGACCAGCAACTGAGTCTGGTTGA
AGAGACGGAGGCCTTCCTGCGCTCTGCACTGGCCCGCGCCGAAGAAAAGATCGAAGAAGATGAACGGGAAATAGAACATC
TGCGGGCTCAGATAGAAAAACTGCGCCGGATGCTGTTCGGTACCCGTTCTGAAAAACTGCGTCGTGAAGTTGAACAGGCT
GAGGCCCTGCTGAAACAACGCGAACAGGACAGTGATCGTTACAGTGGGCGGGAAGACGATCCGCAGGTTCCCCGCCAGTT
GCGACAGTCTCGTCATCGTCGCCCGTTACCGGAGCATCTGCCCCGCGAAATAAATCGCCTGGAGCCAGAAGAAAGCTGTT
GCCCGGAGTGTGGCGGTGAGCTGGATTATCTGGGGGAAGTCAGCGCAGAACAACTGGAACTGGTGAGCAGCGCTCTGAAA
GTGATCCGCACAGAACGGGTAAAAAAAGCCTGTACAAAATGTGACTGCATCGTTGAAGCACCGGCACCATCCCGTCCGAT
AGAGCGTGGTATCGCGGGCCCGGGGTTACTTGCCCGCATGTTAACGGGAAAATACTGCGAACACCTGCCACTGTATCGTC
AGAGTGAAATTTTTGCCCGTCAGGGTGTCGAACTGAGCCGTGCATTACTCTCCAACTGGGTTGACGCGTGCTGCCAGTTA
ATGACGCCGCTGAATGATGCTCTGTACCGTTATGTGATGAACAGCCGCAAAGTTCACACTGATGACACACCAGTAAAAGT
GCTGGCACCGGGCAGGAAGAAGGCGAAAACAGGATATATCTGGACGTATGTCCGGGATGACAGGAATGCCGGTTCGCCAG
AGCCTCCGGCGGTCTGGTTCGCCTACTCACCGGACCATCAGGGTAAACATCCGGAGCAGCACCTTAGTCCCTTCCGGGGT
ATCCTGCAGGCAGATGCGTTTAATGGTTACGATCGGCTGTTCAGTGCCGAACGAGAAGGCGGCGCGTTGACGGAAGCAGG
ATGCTGGGCTCATGCGCGGCGCAAAGTCCACGATGTATATATCAGTACCAAAAGCGCGACAGCGGAAGAAGCCCTGAAAC
TAATCGGTGAGCTGTACGCCATCGAGCACGAAATACGCGGGTTGCCGGTGTCTGAACGCCTGGCGGTCAGGCAAATGCAG
AGTAAACCGCTACTGACTTCCCTGTATAAGCTGATGCAGGAGAAAGAACACACGTTATCGAAAAAATGCCGTCTGAGAGA
TGCGTTCCGGTATATCAGGAAGCACTGGGTTGCGTTGTGCAACTTCAGTGATGATGGTCTGGCTGAGGCGGATAATAATG
CCGCGGAAAGAGCGCTTCGTGCAGTCTGTCTCGGAAAGAAAAACTTTATGTTCTTCGGCAGCGATCACGGTGGAGAGCGT
GGTGCGCTACTGTACGGGCTGATCGGCACCTGCCGACTGAACGGTATCGATCCGGAAGCGTATCTGCGCTATATCCTGAG
CGTACTGCCGGAATGGCCTTCCAACCGTGTTGACGAACTCCTGCCATGGAACGTAGCACTCACCAATAAATAA

Protein sequence :
MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKIEEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQA
EALLKQREQDSDRYSGREDDPQVPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
VIRTERVKKACTKCDCIVEAPAPSRPIERGIAGPGLLARMLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQL
MTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRG
ILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQ
SKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGER
GALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNVALTNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 0.0 90
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 0.0 89
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 0.0 89
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-136 84
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-121 66
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 3e-131 63
tnp AEA34686.1 transposase Not tested Not named Protein 6e-136 63
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 6e-136 63
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 5e-136 63
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 1e-136 63
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 1e-136 63
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 9e-137 63
unnamed AAC31494.1 L0015 Not tested LEE Protein 8e-137 63
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 7e-136 63
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 6e-136 63
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-136 63
unnamed AAL57570.1 unknown Not tested LEE Protein 8e-137 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 3e-105 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-97 48
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-87 47
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 7e-88 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E0906 YP_001879595.1 IS66 family element, transposase VFG1736 Protein 0.0 96
SbBS512_E0906 YP_001879595.1 IS66 family element, transposase VFG1700 Protein 6e-122 66
SbBS512_E0906 YP_001879595.1 IS66 family element, transposase VFG0793 Protein 5e-137 63