|
Name : SbBS512_E4896 (SbBS512_E4896) Accession : - Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 4567551 - 4568020 bp Length : 470 bp Strand : + Note : IS1 ORF2; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03400 DNA sequence : ATGTCGCGCCAGTGCACGCATTATGGACGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAAT CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCTGAGCCTGCTGTCGG CCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGC AAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTCACTGTC GTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Z1192 | NP_286727.1 | IS1 protein InsB | Not tested | TAI | DNA | e-140 | 99.8 |
| Z1632 | NP_287135.1 | IS1 protein InsB | Not tested | TAI | DNA | e-140 | 99.8 |
| aec38 | AAW51721.1 | InsB | Not tested | AGI-3 | DNA | e-119 | 99.8 |
| tnpH | AAD44742.1 | TnpH | Not tested | SHI-2 | DNA | e-138 | 99.4 |
| insB | NP_709451.1 | IS1 ORF2 | Not tested | SHI-2 | DNA | e-134 | 99.4 |
| insB | NP_709463.1 | IS1 ORF2 | Not tested | SHI-2 | DNA | e-138 | 99.4 |
| S4059 | NP_839227.1 | IS1 orfB | Not tested | SHI-2 | DNA | e-138 | 99.1 |
| insB | ADD91744.1 | transposase | Not tested | PAI-I AL862 | DNA | e-133 | 94.5 |
| insB | NP_458736.1 | insertion element IS1 protein InsB | Not tested | SPI-7 | DNA | e-113 | 92 |
| EC042_4113 | YP_006098397.1 | transposase | Not tested | Tn2411 | DNA | e-113 | 92 |
| EC042_4085 | YP_006098368.1 | transposase | Not tested | Tn2411 | DNA | e-113 | 92 |
| InsB (Tn1) | CAJ77072.1 | Transposase | Not tested | AbaR1 | DNA | e-102 | 91.9 |
