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Name : hpcD (SbBS512_E4887) Accession : YP_001883013.1 Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : 5-carboxymethyl-2-hydroxymuconate delta-isomerase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG3232 EC number : 5.3.3.10 Position : 4559869 - 4560249 bp Length : 381 bp Strand : - Note : identified by match to protein family HMM PF02962 DNA sequence : ATGCCGCACTTTATCGTTGAATGCAGTGACAACATCCGCGAAGAAGCCGACCTGCCGGGGTTGTTCGCCAAAGTGAATCC GACGCTGGCAGCCACGGGTATTTTTCCGCTGGCGGGTATTCGCAGCCGCGTGCATTGGGTCGATACCTGGCAGATGGCCG ACGGGCAGCGTGATTATGCCTTCGTGCATATGACGTTGAAAATCGGCGCAGGTCGCAGCCTGGAAAGCCGTCAGCAGGCG GGTGAAATGCTGTTTGAACTGATTAAAACGCACTTCGCCGCCCTGATGGAGAGCCGCCTGCTGGCGTTGTCGTTTGAGAT TGAAGAGCTGCATCCGACGCTGAATTTTAAACAAAACAACGTGCACGCATTGTTTAAGTAG Protein sequence : MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQA GEMLFELIKTHFAALMESRLLALSFEIEELHPTLNFKQNNVHALFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hpaF | AAO17181.1 | HpaF | Not tested | tcd island | Protein | 1e-45 | 77 |
