|
Name : SbBS512_E4825 (SbBS512_E4825) Accession : YP_001882959.1 Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : IS1 transposase orfB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1662 EC number : - Position : 4498481 - 4498984 bp Length : 504 bp Strand : - Note : identified by match to protein family HMM PF03400 DNA sequence : ATGTCGTGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAAT CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGAGGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTG GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC AACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTAT CTGAACATAAAACACTATCAGTAA Protein sequence : MSCQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRRVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKLLSFSKSVELHDKVIGHY LNIKHYQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Z1192 | NP_286727.1 | IS1 protein InsB | Not tested | TAI | Protein | 9e-66 | 99 |
| Z1632 | NP_287135.1 | IS1 protein InsB | Not tested | TAI | Protein | 9e-66 | 99 |
| aec38 | AAW51721.1 | InsB | Not tested | AGI-3 | Protein | 7e-51 | 99 |
| tnpH | AAD44742.1 | TnpH | Not tested | SHI-2 | Protein | 4e-65 | 98 |
| S4059 | NP_839227.1 | IS1 orfB | Not tested | SHI-2 | Protein | 6e-65 | 98 |
| insB | NP_709463.1 | IS1 ORF2 | Not tested | SHI-2 | Protein | 2e-47 | 97 |
| insB | NP_709451.1 | IS1 ORF2 | Not tested | SHI-2 | Protein | 1e-64 | 96 |
| insB | ADD91744.1 | transposase | Not tested | PAI-I AL862 | Protein | 1e-62 | 93 |
| EC042_4085 | YP_006098368.1 | transposase | Not tested | Tn2411 | Protein | 2e-62 | 89 |
| EC042_4113 | YP_006098397.1 | transposase | Not tested | Tn2411 | Protein | 2e-62 | 89 |
| insB | NP_458736.1 | insertion element IS1 protein InsB | Not tested | SPI-7 | Protein | 2e-62 | 89 |
| InsB (Tn1) | CAJ77072.1 | Transposase | Not tested | AbaR1 | Protein | 7e-60 | 88 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SbBS512_E4825 | YP_001882959.1 | IS1 transposase orfB | VFG0612 | Protein | 3e-65 | 96 |
