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Name : lpfB (SbBS512_E4194) Accession : YP_001882436.1 Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : long polar fimbrial operon protein LpfB Function : - COG functional category : N : Cell motility COG ID : COG3121 EC number : - Position : 3919385 - 3920116 bp Length : 732 bp Strand : + Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753 DNA sequence : ATGTCCAGAAAAAGTTGTTTAATCAGGCTCTTTAAAACAACAGTTTCATGTAAGTTATTTACCGCGATTATACTCAGCAT TTTTTTAGGCCAACCAGCATTAACTTATGCAGGCGTTGTCATTGGTGGTACGCGGGGGGTTTACTTAAGTAATAATGCTG ATAAATCTATTTCTGTATTTAGCAAAGAAGAAAAAATACCTTATCTCATCCAAGCTTGGGTAGATCCATTTAATAAAGAG GATAAAAGCAAAGCGCCGTTTACCGTTATTCCGCCAGTATCACGATTAGAACCTTCGCAAGAAAAAATATTACGCATTAT TCACACCAAAGGTGTGTCATTGCCTGATTATCGCGAGTCAGTCTTCTGGCTGAATATTAAAAATATTCCGCCATCAGCGA GCAACAAAGCGACGAACTCGCTGGAAATAGCAGTAAAAACGCGTATCAAGCTGTTCTGGCGACCAGCAAATATCCGCCTT ATTCCCGAAGATGCTGCGCCGAAAGTGAAATGGCGCCGGGAAGGGCGAAATCTGATAGCAGAGAATCCCAACCCAATTCA TATCAGTGTGATGGATGTCATCGTTGATGGCCATGATGTGCCCCTCAATATGATCCGTCCTTTTGAAACGCTCACGTTAC CTTTACCTGCTAATTCTGCGGGAGGCCAAATGACCTGGCGATTTATTAATGATTACGGCGCAGTCAGTGACCCGATAAAA ATGACGCTGTAA Protein sequence : MSRKSCLIRLFKTTVSCKLFTAIILSIFLGQPALTYAGVVIGGTRGVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKE DKSKAPFTVIPPVSRLEPSQEKILRIIHTKGVSLPDYRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPANSAGGQMTWRFINDYGAVSDPIK MTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfB | YP_006098366.1 | fimbrial chaperone protein | Not tested | Tn2411 | Protein | 3e-107 | 96 |
