Gene Information

Name : SbBS512_E3631 (SbBS512_E3631)
Accession : YP_001881941.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS2 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3379252 - 3379872 bp
Length : 621 bp
Strand : +
Note : identified by match to protein family HMM PF00665

DNA sequence : 
ATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGT
GAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCG
CGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTGACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGTC
ATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATG
CTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGA
GTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACG
GCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACG
GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAG

Protein sequence : 
MRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDV
MLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLT
AAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 7e-94 100
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 5e-94 100
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 3e-91 97
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 2e-91 97
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 2e-89 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E3631 YP_001881941.1 IS2 transposase orfB VFG0649 Protein 2e-94 100