Gene Information

Name : qseB (SbBS512_E3459)
Accession : YP_001881793.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3215227 - 3215886 bp
Length : 660 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACTGGCCTTAGTAAAATGGGTTTTAGTGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGTGAATGGCGAGAGAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGTGATGCGTTAGCGGAACGTGTAGAAGGGCTGCGTCAGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAGGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTACCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-41 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 1e-39 44
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 5e-36 43
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 3e-30 43
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 4e-33 42
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 5e-31 41
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 1e-35 41
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 5e-40 47
qseB YP_001881793.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 9e-33 42