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Name : gspD (SbBS512_E3412) Accession : - Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 3172733 - 3174728 bp Length : 1996 bp Strand : - Note : general secretion pathway protein GspD; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03958 DNA sequence : GTGTTTTGGCGTGATATTACGTTGTCGGTCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCT GGTGCTGGCAGCGGCATTATGCAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACC TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTACAGGGGAAAGTGAGT ATTCGCACCATGACCCCGCTCAATGAACGCCAGTATTACCAGCTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCCGT CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCCAGCGCTGCGAAAGTCGAGCCGCTGCCGCTGGTCGGTGAAG GCAGCGACAACTACGCGGGCGATGAAATGGTCACCAAAGTAGTGCCGGTACGTAATGTGTCGGTACGCGAGCTGGCACCG ATTCTGCGCCAGATGATCGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTGATTATGCTCACCGG ACGCGCCTCCGTTGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCACGCGGGTAATCGCACCGAAGAGGTGATCC CGCTGGATAACGCCTCGGCTTCGGAAATCGCCCGCGTGCTGGAAAGCCTGACGAAAAACAGCGGCGAGAACCAGCCTGCG ACGCTGAAATCTCAAATTGTCGCCGACGAACGCACCAACAGTGTGATTGTCAGTGGTGACCCGGCCACGCGGGACAAAAT GCGCCGCCTGATCCGTCGGCTGGACTCAGAAATGGAACGCAGCGGCAACAGCCAGGTTTTCTATCTCAAATACAGCAAAG CCGAAGATCTGGTCGATGTGCTGAAACAGGTCAGCGGCACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACGGTCGGT AGCGGGCGTGAGGTTGTATCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTAACCGCGCCGCAGGACATCATGCA GTCGCTGCAAAGCGTAATTGAATAACTGGATATTCGCCGTGCAGTGGGCGTCGAAAGATGCCGGATTAATGCAGTTTGCT AATGGTACGCAGATCCCTATCGGTACGCTGGGGGCAGCCATTTCTCAGGCGAAACCGCAGAAAGGCTCGACGGTGATCAG TGAAAACGGCGCTACCACCATTAATCCGGATACCAACGGCGATCTCTCCACACTCGCCCAGCTTCTTTCTGGATTTAGCG GTACGGCGGTTGGCGTGGTGAAAGGCGACTGGATGGCACTGGTGCAGGCGGTTAAAAACGACTCCAGCTCGAACGTTCTC TCCACGCCGAGCATCACTACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCTAGGACGTTCCGGTATTAACCGGCTC TACCGTTGGCTCCAATAACAGCAATCCTTTCAATACAGTAGAAAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGC AGATTAACGAAGGTAACGCGGTACAGATGGTGATTGAGCAGGAAGTCTCGAAGGTGGAAGGACAGACCAGCCTCGACGTG GTGTTTGGTGAGCGCAAACTGAAAACCACCGTGCTGGCTAACGATGGTGAGCTGATTGTGCTTGGTGGTCTGATGGACGA TCAGGCGGGAGAAAGCGTGGCGAAAGTGCCTCTGCTGGGCGATATCCCATTGATTGGTAACCTGTTTAAATCGACGGCGG ATAAAAAAGAAAAACGTAACCTGATGGTGTTTATCCGCCCGACCATTCTGCGTGACGGTATGGCGGCAGACGGCGTGTCG CAGCGCAAATATAACTATATGCGCGCCGAACAGATCTATCGTGATGAGCAAGGTTTAAGCCTGATGCCGCACACCGCACA GCCGGTACTGCCAGCGCAAAACCAGGCCTTACCGCCGGAAGTTCGCGCGTTCCTCAATGCCGGGAGAACGCGTTAA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | DNA | 0.0 | 96.9 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | DNA | 0.0 | 95.2 |
