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Name : gspF (SbBS512_E3410) Accession : YP_001881748.1 Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Virulence Product : general secretion pathway protein GspF Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3170018 - 3171241 bp Length : 1224 bp Strand : - Note : identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGCATGATTGAGGCGGATTCCGCGCGTCA TGCCCGCCAGTTGTTGCGCGGTAAAGAGCTTATCCCCGTGCACATTGAAGCCAGGATGAATGCATCGGCAGGGGGAATGT TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGGCGGCAGATCTGGCGCTGTTCACGCGCCAACTGGCAATGCTGGTG CAGGCAGCAATGCCGTTGGAAACCTGCTTGCAGGCGGTCAGTGAGCAAAGTGAAAAACTGCATGTGAAGAGCCTCGGAAT GGCGCTGCGCAGCCGGATTCAGGAAGGTTATACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGATTCCCTGT TTTGTTCGATGGTCGCTGCCGGAGAAAAATCCGGGCATCTCGACGTGGTGCTCAATCGCCTGGCAGATTACACCGAACAG CGACAGCGCCTGAAATCACGTCTATTGCAGGCCATGCTCTATCCGCTGGTTATGCTGGTGGTGGCAACGGGCGTGGTCAC TATTTTGCTGACGGCAGTGGTGCCGAAAATCATCGAACAGTTTGATCATCTCGGACACGCGCTACCCTCCTCCACCCGTG CGCTTATCGCCATGAGTGATGCGTTACAGGCCAGCGGCGTTTACTGGCTGGCGGGATTGCTGGCGCTTCTGGTGCTGGGG CAATGGCTACTTAAAAATCCGACTATGCGCCTGCGCTGGGATAAAACCTTGCTGCGTCTGCCCGTGACGGGCCGTGTTGC GCGCGGGCTGAATACGGCGCGTTTTTCCCGCACATTAAGCATCCTCACCGCCAGCAGTGTTCCGCTACTGGAAGGCATTC AGACCGCTGCCGCCGTGTCGGCAAATCGCTATGTCGAACAACAACTGCTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC AGTCTGCGCGCCGCGCTGGTGGAGTTGCGCCTGTTCCCGCCGATGATGCTGTACATGATCGCTTCCGGCGAACAGAGCGG CGAACTGGAAACCATGCTTGAGCAGGCCGCTGTTAACCAGGAACGGGAATTTGATACCCAGGTGGGGCTGGCGTTGGGGC TGTTTGAGCCTGCGCTGGTGGTGATGATGGCGGGCGTGGTGCTGTTTATTGTCATCGCCATCCTCGAGCCGATGCTGCAA CTGAATAATATGGTTGGAATGTAA Protein sequence : MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNASAGGMLQRRRHAHRRVAAADLALFTRQLAMLV QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYWLAGLLALLVLG QWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS SLRAALVELRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ LNNMVGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-168 | 98 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-167 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_001881748.1 | general secretion pathway protein GspF | VFG2049 | Protein | 2e-161 | 97 |
| gspF | YP_001881748.1 | general secretion pathway protein GspF | VFG0181 | Protein | 1e-76 | 46 |
