Gene Information

Name : SbBS512_E2413 (SbBS512_E2413)
Accession : YP_001880891.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS66 family element, transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2208501 - 2210039 bp
Length : 1539 bp
Strand : -
Note : identified by match to protein family HMM PF03050

DNA sequence : 
ATGAGCAGCTCACTTCCTGACGATATCAATGCACTGAAACGTCTCCTTGCCGAACAGGAGGCGCTGAACCGTGCCCTGCT
GGAAAAGCTGAACGAGCGTGAACGCGAAATAGACCATCTGCAGGCACAGCTGGATAAGCTGCGCCGGATGAACTTCGGCA
GCCGCTCCGAAAAAGTCTCCCGTCGTATCGCACAGATGGAAGCTGACCTGAAGGCACTTCAGAAAGAAAGTGATACCCTT
ACCGGTCGGGTTGACGACCCGGCCGTGCAGCGCCCGCTGCGTCAAACCCGCACCCGCAAACCGTTCCCCGAATCACTCCC
CCGCGATGAAAAACGGCTGCTGCCGGCAGCGTCATGCTGCCCGGAATGTGGAGGCTCACTGAGCTATCTGGGTGAGGATG
CCGCCGAACAGCTGGAGTTGATGCGCAGCGTCTTCCGGGTTATCCGGACTGTACGTGAAAAGCATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCCCCCGCGCCTTCACGGCCCATCGAGCGGGGTATCGCAGGACCGGGGCTGCTGGCCCGCGTGCT
GATCTCAAAGTATGCAGAGCACACCCCGCTGTACCGCCAGTCTGAAATGTACGGCCGCCAGGGCGTGGAGCTGAGTCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTACTGTCACCGCTGGAAGAAGCGCTTCAGGACTATGTGCTGACT
GACGGTAAGCTCCATGCTGATGACACGCCTGTCCCGGTGCTGTTGCCAGGCAATAAGAAAACGAAGACCGGGCGGTTATG
GACCTACGTTCGTGACGACCGTAACGCCGGGTCAACGCTGGCGCCGGCGGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACCCATCTTGCGGGGTTCAGTGGTGTACTGCAGGCGGATGCATACGCCGGGTTCAACGAGCTGTAC
CGGGATGGCCGGATAACGGAAGCCGCCTGTTGGGCTCACGCCCGCCGTAAAATCCACGATGTGCACGTTCGCACCCCGTC
AGCCCTGACGGAGGAAGCGCTGAAACGGATCGGCGAACTGTACGCCATCGAGGCAGAGATAAGGGGAATGACGGCGGAGC
AGCGCCTTGCCGAACGTCAGTTGAAAACGAAACCGCTGCTGAAATCCCTGGAAAGCTGGCTGCGTGAAAAGATGAAAACC
CTGTCGCGACACTCAGAACTGGCGAAAGCGTTCGCATACGCCCTGAACCAGTGGCCGGCGCTGACGTACTATGCAGATGA
TGGCTGGGCTGAGGCGGACAATAACATCGCTGAAAATGCGTTGCGGATGGTCAGTCTGGGCCGCAAAAACTACCTGTTCT
TCGGTTCGGATCATGGAGGAGAGCGGGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAACGGAGTGGAGCCA
GAAAGCTACCTCCGCTATGTCCTTGACGTCATAGCCGACTGGCCGATAAACCGGGTCGGCGAACTGCTCCCCTGGCGCGT
AGCACTGCCGACTGAATAA

Protein sequence : 
MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLKALQKESDTL
TGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCCPECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT
DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY
RDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEP
ESYLRYVLDVIADWPINRVGELLPWRVALPTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-173 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 92
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 90
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 90
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 90
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 90
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 90
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 90
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 90
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 90
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 90
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 90
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 90
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-166 90
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-153 66
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 4e-157 65
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 4e-157 65
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 6e-108 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-144 59
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 5e-102 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-137 57
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 2e-121 55
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-121 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E2413 YP_001880891.1 IS66 family element, transposase VFG1700 Protein 2e-173 99
SbBS512_E2413 YP_001880891.1 IS66 family element, transposase VFG0793 Protein 0.0 90
SbBS512_E2413 YP_001880891.1 IS66 family element, transposase VFG1051 Protein 6e-167 90
SbBS512_E2413 YP_001880891.1 IS66 family element, transposase VFG1736 Protein 6e-126 64
SbBS512_E2413 YP_001880891.1 IS66 family element, transposase VFG1513 Protein 4e-108 63