Gene Information

Name : SbBS512_E2396 (SbBS512_E2396)
Accession : YP_001880877.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS1 protein InsB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 2189909 - 2190319 bp
Length : 411 bp
Strand : +
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAAT
CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCTTCGGTGAACGCACTCTG
GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA
ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC
AACATCTGTAA

Protein sequence : 
MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 3e-52 100
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 2e-53 100
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 2e-53 100
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-53 99
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 2e-53 99
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 4e-53 98
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-35 98
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 3e-49 92
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 5e-49 88
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 5e-49 88
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 5e-49 88
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 4e-49 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E2396 YP_001880877.1 IS1 protein InsB VFG0612 Protein 1e-53 98