Gene Information

Name : SbBS512_E2309 (SbBS512_E2309)
Accession : YP_001880803.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS1 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 2098999 - 2099502 bp
Length : 504 bp
Strand : -
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGATACGTCGGGGCTAAAT
CGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG
GCGACGCAGGGGCGTCTTATGAGCTTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCACTGTATGA
ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGC
AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT
CTGAACATAAAACACTATCAATAA

Protein sequence : 
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTM
ATQGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 3e-74 97
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 3e-74 97
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 3e-74 97
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 1e-71 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 9e-73 93
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 8e-73 93
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 8e-73 93
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 3e-72 92
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 5e-72 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 4e-55 91
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 2e-57 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 2e-70 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E2309 YP_001880803.1 IS1 transposase orfB VFG0612 Protein 6e-71 90