Gene Information

Name : SbBS512_E2112 (SbBS512_E2112)
Accession : YP_001880640.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : ISSd1, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1922115 - 1922933 bp
Length : 819 bp
Strand : -
Note : identified by match to protein family HMM PF00665

DNA sequence :
ATGTGTCAGGTATTTGGTGTATCCAGGAGCGGTTATTACAACTGGGTACAGCATGAACCCTCAGACAGAAAACAAAGTGA
TGAGCGGCTAAAACTGGAGACTAAGGTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGC
TGGCAGAGAATGGCATCATCGTTGGTCGTGACCGACTGGCACGTCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAA
CGCAAGTTCAGAGCGACTACGAACCCGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTAC
AGCACCAAATCAGGTCTGGGTGGCGGACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAG
ATGTTTATACGTGCGAAATTGTCGGCTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATG
GCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCG
GGTCATACAGGAGCAGTCTGGTCTGAAAACATCAATGTCGCGTAAAGGTCACTGTTACGACAACGCTCTGATGGAAAGCT
TCTGGGGAACGCTGAAAAATGAGAGCCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAA
TACATTGAGATTTTCTACAATCGTCAGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATA
TCATCAGATGGCTGCTTAA

Protein sequence :
MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLETKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQK
RKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGHCYDNALMESFWGTLKNESLSHYRFNNRDEAISVIRE
YIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-113 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-111 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-112 99
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-112 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-112 99
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-111 98
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-111 98
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-112 98
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-112 98
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-43 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-43 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-43 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-41 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-41 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 7e-42 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E2112 YP_001880640.1 ISSd1, transposase orfB VFG1706 Protein 3e-112 98
SbBS512_E2112 YP_001880640.1 ISSd1, transposase orfB VFG1631 Protein 2e-41 42