|
Name : SbBS512_E2111 (SbBS512_E2111) Accession : - Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Unknown Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 1921219 - 1921596 bp Length : 378 bp Strand : + Note : IS1 transposase orfB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF03400 DNA sequence : ATGGACGAACAGTGGGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGAC GGTTGTGGCGCACGTCTTCGGTGAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCG TGGTATGGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACG CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec38 | AAW51721.1 | InsB | Not tested | AGI-3 | DNA | e-173 | 97 |
| Z1192 | NP_286727.1 | IS1 protein InsB | Not tested | TAI | DNA | e-201 | 96.3 |
| Z1632 | NP_287135.1 | IS1 protein InsB | Not tested | TAI | DNA | e-201 | 96.3 |
| insB | NP_709463.1 | IS1 ORF2 | Not tested | SHI-2 | DNA | e-198 | 95.8 |
| tnpH | AAD44742.1 | TnpH | Not tested | SHI-2 | DNA | e-198 | 95.8 |
| S4059 | NP_839227.1 | IS1 orfB | Not tested | SHI-2 | DNA | e-198 | 95.5 |
| insB | NP_458736.1 | insertion element IS1 protein InsB | Not tested | SPI-7 | DNA | e-188 | 95.5 |
| EC042_4113 | YP_006098397.1 | transposase | Not tested | Tn2411 | DNA | e-188 | 95.5 |
| EC042_4085 | YP_006098368.1 | transposase | Not tested | Tn2411 | DNA | e-188 | 95.5 |
| insB | ADD91744.1 | transposase | Not tested | PAI-I AL862 | DNA | e-193 | 94.4 |
| insB | NP_709451.1 | IS1 ORF2 | Not tested | SHI-2 | DNA | e-191 | 93.9 |
