Gene Information

Name : SbBS512_E1988 (SbBS512_E1988)
Accession : YP_001880536.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS1 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 1812036 - 1812413 bp
Length : 378 bp
Strand : -
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCTTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCACTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACG
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYT
QRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 9e-56 100
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 9e-56 100
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 9e-56 100
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 4e-54 96
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 1e-53 94
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 1e-53 94
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 2e-52 92
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 7e-53 92
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 5e-53 92
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 4e-51 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E1988 YP_001880536.1 IS1 transposase orfB VFG0612 Protein 1e-51 91