Gene Information

Name : sitA_2 (SbBS512_E1612)
Accession : YP_001880202.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Virulence
Product : iron/manganese transport system periplasmic binding protein SitA
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1466164 - 1467048 bp
Length : 885 bp
Strand : -
Note : identified by match to protein family HMM PF01297

DNA sequence : 
TTGGGGTGCCTCGCCCTCACCTGCTCGATCGCATTTCAGGCAAGTGCAACTGAAAAATTCAAGGTCATTACAACATTTAC
CATCATCGCGGATATGGCCAAAAACGTGGCTGGAGATGCTGCAGAAGTCTCATCCATAACCAAGCCTGGTGCAGAAATTC
ATGAGTATCAGCCTACCCCTGGCGATATTAAACGTGCACAGGGGGCACAACTGATTCTCGCCAATGGTATGAATCTGGAA
TTGTGGTTCCAACGCTTTTACCAGCATCTCAATGGGGTTCCAGAAGTAATTGTCTCTTCGGGTGTGACGCCAGTAGGGAT
CACCGAAGGACCCTATGAGGGCAAACCTAATCCCCATGCATGGATGTCGCCAGATAATGCTCTGATTTACGTCGATAATA
TTCGTGATGCGTTGATAAAATACGATCCGGCAAATGCACAAACCTACCAACGTAATGCCGATACTTATAAAGCCAAGATT
ACCCAAACCCTTGCCCCCCTGCGTAAGCAGATTACGGAACTCCCTGAGAATCAGCGATGGATGGTCACCAGTGAAGGGGC
TTTTTCTTATCTCGCACGCGATTTGGGGCTAAAAGAGCTTTATCTGTGGCCGATTAATGCCGATCAACAAGGAACACCGC
AGCAGGTACGTAAGGTTGTTGATATAGTTAAGAAAAATCATATCCCGGCAGTCTTTAGCGAGAGTACGATTTCCGATAAA
CCAGCGCGTCAGGTTGCGCGTGAAACCGGCGCACACTACGGCGGTGTGCTCTATGTCGATTCCCTGAGCACAGAAAACGG
CCCGGTACCTACGTATATCGACCTTCTTAAGGTTACTACCAGTACGCTGGTACAGGGAATTAAAGCCGGGAAAAGGGAGA
AATAA

Protein sequence : 
MGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLE
LWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKI
TQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAVFSESTISDK
PARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-111 80
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-111 80
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-111 80
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-111 80
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-111 80

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA_2 YP_001880202.1 iron/manganese transport system periplasmic binding protein SitA BAC0349 Protein 4e-111 80
sitA_2 YP_001880202.1 iron/manganese transport system periplasmic binding protein SitA BAC0439 Protein 9e-91 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA_2 YP_001880202.1 iron/manganese transport system periplasmic binding protein SitA VFG0525 Protein 3e-111 80