Gene Information

Name : SbBS512_E1598 (SbBS512_E1598)
Accession : YP_001880192.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : ISSd1, transposase orfA/B, fusion
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1457319 - 1457621 bp
Length : 303 bp
Strand : +
Note : identified by match to protein family HMM PF01527

DNA sequence :
ATGAGCAGAAAAAACCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACCGTGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence :
MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATVYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-39 99
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 1e-39 99
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-39 98
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-39 98
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-34 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-34 98
unnamed AAF09021.1 unknown Not tested SHI-O Protein 5e-39 97
unnamed AAF09029.1 unknown Not tested SHI-O Protein 5e-39 97
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 2e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E1598 YP_001880192.1 ISSd1, transposase orfA/B, fusion VFG1707 Protein 4e-40 99