Gene Information

Name : SbBS512_E1548 (SbBS512_E1548)
Accession : YP_001880151.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS1 transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 1412920 - 1413297 bp
Length : 378 bp
Strand : -
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCAGGGGCGTCTTATGAGCTTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCACTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGTGTTACACT
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATC
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATQGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKCYT
QRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 6e-54 99
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 6e-54 99
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 6e-54 99
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 2e-52 94
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 1e-51 92
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 1e-51 92
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 9e-51 91
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 7e-51 91
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 5e-51 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 3e-49 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E1548 YP_001880151.1 IS1 transposase orfB VFG0612 Protein 8e-50 89