Gene Information

Name : SbBS512_E1524 (SbBS512_E1524)
Accession : YP_001880128.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Unknown
Product : IS66 family element, orf2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1392078 - 1392425 bp
Length : 348 bp
Strand : -
Note : identified by match to protein family HMM PF05717

DNA sequence :
ATGATCCCGTTACCTTCCGGGACCAAAATTTGGCTGGTTGCCGGTATCACCGATATGAGAAATGGCTTCAACGGCCTGGC
GGCAAAGGTGCAGACGACGCTGAAAGACGATCCGATGTCAGGTCACGTTTTTATCTTCCGTGGGCGTAATGGCAGTCAGG
TAAAGCTCCTCTGGTCTACCGGCGATGGACTGTGTCTGCTGACCAAACGGCTGGAGCGCGGCCGCTTCGCCTGGCCGTCA
GCCCGGGATGGCAAAGTGTTCCTCACACCGGCACAGCTGGCGATGCTCCTTGAAGGTATCGACTGGCGGCAGCTTAAAAG
ACTGCTTACGTCCCTGACTATGTTGTAA

Protein sequence :
MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVFIFRGRNGSQVKLLWSTGDGLCLLTKRLERGRFAWPS
ARDGKVFLTPAQLAMLLEGIDWRQLKRLLTSLTML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-48 99
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 3e-48 99
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-47 97
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 5e-36 97
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-47 97
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-47 97
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-47 97
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-47 97
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-47 97
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-47 97
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-47 97
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-46 96
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-46 96
unnamed AAL08461.1 unknown Not tested SRL Protein 3e-47 95
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 7e-39 76
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 7e-39 76
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 2e-38 75
ECO103_3553 YP_003223420.1 hypothetical protein Not tested LEE Protein 2e-36 72
Z4316 NP_289542.1 hypothetical protein Not tested OI-122 Protein 2e-36 72
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 9e-29 68
ECO103_3567 YP_003223430.1 hypothetical protein Not tested LEE Protein 3e-33 65
Z4338 NP_289563.1 hypothetical protein Not tested OI-122 Protein 3e-33 65
Z1160 NP_286695.1 hypothetical protein Not tested TAI Protein 5e-34 64
Z1599 NP_287103.1 hypothetical protein Not tested TAI Protein 5e-34 64
ECUMN_3364 YP_002414037.1 putative transposase ORF2, IS66 family Not tested Not named Protein 6e-34 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1698 Protein 9e-49 99
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1709 Protein 6e-48 97
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG0792 Protein 6e-48 97
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1517 Protein 2e-36 97
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1052 Protein 1e-47 95
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1665 Protein 6e-39 75
SbBS512_E1524 YP_001880128.1 IS66 family element, orf2 VFG1737 Protein 2e-34 63