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Name : SbBS512_E1125 (SbBS512_E1125) Accession : YP_001879774.1 Strain : Shigella boydii CDC 3083-94 Genome accession: NC_010658 Putative virulence/resistance : Virulence Product : DNA repair protein, RadC family Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 1021702 - 1022178 bp Length : 477 bp Strand : + Note : identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 DNA sequence : ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACTCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA CCGCCATCTTCATGAACCCGGCGTGACCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA Protein sequence : MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVTFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| yeeS | AAZ04458.1 | putative RadC-like protein | Not tested | PAI I APEC-O1 | Protein | 1e-62 | 99 |
| yeeS | YP_854323.1 | radC-like protein YeeS | Not tested | PAI I APEC-O1 | Protein | 2e-62 | 99 |
| c5152 | NP_757000.1 | radC-like protein yeeS | Not tested | PAI II CFT073 | Protein | 2e-62 | 99 |
| z1217 | CAD33787.1 | Z1217 protein | Not tested | PAI I 536 | Protein | 3e-62 | 99 |
| Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 1e-61 | 99 |
| yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 5e-62 | 99 |
| yeeS | CAI43846.1 | YeeS protein | Not tested | LEE | Protein | 2e-62 | 99 |
| yeeS | ADD91702.1 | YeeS | Not tested | PAI-I AL862 | Protein | 2e-62 | 99 |
| ECO103_3589 | YP_003223446.1 | radC-like protein YeeS | Not tested | LEE | Protein | 1e-61 | 98 |
| unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 9e-62 | 98 |
| yeeS | CAE85201.1 | YeeS protein | Not tested | PAI V 536 | Protein | 5e-62 | 98 |
| unnamed | CAD66203.1 | hypothetical protein | Not tested | PAI III 536 | Protein | 4e-61 | 97 |
| Z1657 | NP_287160.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 3e-60 | 97 |
| unnamed | CAD42098.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 5e-61 | 97 |
| aec73 | AAW51756.1 | Aec73 | Not tested | AGI-3 | Protein | 6e-62 | 97 |
| unnamed | AAL67345.1 | intergenic-region protein | Not tested | PAI II CFT073 | Protein | 9e-61 | 97 |
| unnamed | AAK00479.1 | unknown | Not tested | SHI-1 | Protein | 3e-54 | 95 |
| yeeS | NP_838484.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 1e-59 | 95 |
| yeeS | NP_708770.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 1e-59 | 95 |
| VC0510 | NP_230161.1 | DNA repair protein RadC-like protein | Not tested | VSP-2 | Protein | 5e-17 | 53 |
| VC1786 | NP_231421.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 3e-19 | 50 |
| VC0395_A1383 | YP_001217326.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 3e-19 | 50 |
| VPI2_0034 | ACA01849.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 2e-19 | 50 |
| radC | AAN62140.1 | putative DNA repair protein RadC | Not tested | PAGI-2(C) | Protein | 9e-20 | 47 |
| radC | AAN62275.1 | putative DNA repair protein RadC | Not tested | PAGI-3(SG) | Protein | 3e-19 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG1528 | Protein | 1e-62 | 99 |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG1066 | Protein | 4e-62 | 98 |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG1617 | Protein | 2e-61 | 97 |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG1678 | Protein | 2e-61 | 97 |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG0660 | Protein | 4e-60 | 95 |
| SbBS512_E1125 | YP_001879774.1 | DNA repair protein, RadC family | VFG1119 | Protein | 9e-20 | 50 |
