Gene Information

Name : SbBS512_E1124 (SbBS512_E1124)
Accession : YP_001879773.1
Strain : Shigella boydii CDC 3083-94
Genome accession: NC_010658
Putative virulence/resistance : Virulence
Product : antirestriction protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1021207 - 1021686 bp
Length : 480 bp
Strand : +
Note : identified by match to protein family HMM PF03230

DNA sequence :
ATGAAAACCGTTTCTCAGAATACCCCCACAATTTATTCAGCTACAACACCAGAGAATAATCCGCCTCAGTTGGTTGCCAG
CCTCGTCCCTGATGAACAGCGCATCAACTTCTGGCCGCAGCATTTTGGCCTCATTCCACAGTGGGTGACCCTGGAGCCCC
GTGTCTTCGGCTGGATGGACCGTCTGTGCGAAGACTACTGCGGTGGTATCTGGAATCTGTACACCCTGAACAACGGCGGG
GCATTTATGGCACCCGAACCGGATGACGATGATGACGAAACATGGGTACTGTTCAATGCCATGAACGGTAACCGCGCAGA
AATGAGCCCGGAAGCCGCCGGTATTGCCGCCTGTCTGATGACGTACAGTCATCATGCCTGTCGTACGGAGAATTATGCCA
TGACGGTCCATTATTACCGGTTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATCGACTGA

Protein sequence :
MKTVSQNTPTIYSATTPENNPPQLVASLVPDEQRINFWPQHFGLIPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGG
AFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 5e-60 92
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 5e-60 92
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 2e-62 91
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 1e-60 91
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 1e-60 91
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-59 90
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-60 90
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-60 90
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-60 90
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 4e-60 90
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 1e-59 90
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 1e-63 88
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 8e-64 88
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 3e-64 87
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 9e-65 86
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 7e-65 86
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 5e-63 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SbBS512_E1124 YP_001879773.1 antirestriction protein VFG0659 Protein 1e-60 92
SbBS512_E1124 YP_001879773.1 antirestriction protein VFG1677 Protein 3e-64 88
SbBS512_E1124 YP_001879773.1 antirestriction protein VFG1527 Protein 4e-64 88
SbBS512_E1124 YP_001879773.1 antirestriction protein VFG1616 Protein 1e-64 87