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Name : gspE (BAV0334) Accession : YP_784872.1 Strain : Bordetella avium 197N Genome accession: NC_010645 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 351982 - 353403 bp Length : 1422 bp Strand : + Note : - DNA sequence : ATGAGTGTCCATCCCCTGCCTTATGCCTGGGCGCGCGCGCAGCGCGCGGTACTCAGTCTGCGCGCCGGGCAGGCGCAGCT GACGGTCAGCCCGCGCACGCCCTCCTGGGCGGTGCGCGAGGTGCGGCGCCGGCATGGCGAGGTTTTGCTGCACGAGGTGG ATGACCAGACACTGGAAAGCCTGCTCACCGCCAGCTACACGCATGGCGAAGACGCGGCCTCTGTCATGGGTGTGGCCGAG AACGAAATCGATCTGGACCGCCTGCTGCAAGATATCCCCGAAGTGGCGGACCTGTTGGAAGCCCAGGATGACGCGCCCGT CATTCGTATGATCAACGCCCTGTTTGCGCAGGCCGCGCGCGATGGCGCCAGCGATATCCATATCGAACCGTTCGAGACGC ATTCTGCGGTGCGCTTTCGCGTGGATGGCACGCTGCGCGATGTGGTCACGCCGCGCAAAGGGCTGCATGCCGCGCTGATT TCACGTATCAAGATCATGGCGTACCTGGATATCGCCGAGAAGCGCTTGCCGCAAGACGGGCGTATCGCCCTGCGTGTGGG CGGGCGGCCGATCGATGTGCGTGTCTCGACGCTGCCGACCGGGCACGGCGAGCGCGCCGTGCTGCGTCTGCTCGATAAAG AGGCTGGGCGGCTGCAATTAGAGCGCTTGGGAATGAGTCCCCGCGTGCTGGGCCAGCTTGATCGTTTGATACGCCAGCCG CATGGCATCGTGCTGGTGACTGGTCCGACCGGCAGCGGCAAGACCACCACCCTGTATGCCGCGCTAAGCCGTCTGGATGC CGCCACCAGCAATATCCTGACGGTGGAAGACCCGATCGAATATGACCTGCCGGGGGTAAGCCAAACACAGATCAACGCCA AGATCGACATGAGCTTTGCGATGGCGCTGCGCGCGATTCTGCGTCAGGACCCGGACGTGATCATGATCGGTGAAATCCGC GACCTCGAAACCGCGCAGATCGCTGTGCAGGCCTCGTTGACCGGCCATTTGGTGCTGGCCACCCTGCACACCAATGATTC GGTGTCCGCCGTCACCCGTCTGGTCGACATGGGGGTAGAGCCTTTTCTGCTCGCCTCCTCCCTGTTGGGGGTGCTGGCTC AGCGCCTGGTGCGCCGTCTGTGCCCGGCCTGCAAAACGCCGGTCGATGGCGGGCCGCAATATCGCGCGGTGGGTTGCCCC CTTTGCAATCACAGTGGCTATAGCGGACGCTCGGGCATTCATGAGCTGTTTATCGTCGATGATGGGGCGCGCAGCCATAT TCACGACGGCCGCGACGAACGCGCATTGCGCGTGGCCGCCGTGGCGGCGGGCCTGCGCAGCATGCGCGAAGATGGGCAGC GCTGGGTCGATGCGGGAGAGACTTCGCCCGAGGAGGTCTTGAGGGTGACCAAGGACGATTGA Protein sequence : MSVHPLPYAWARAQRAVLSLRAGQAQLTVSPRTPSWAVREVRRRHGEVLLHEVDDQTLESLLTASYTHGEDAASVMGVAE NEIDLDRLLQDIPEVADLLEAQDDAPVIRMINALFAQAARDGASDIHIEPFETHSAVRFRVDGTLRDVVTPRKGLHAALI SRIKIMAYLDIAEKRLPQDGRIALRVGGRPIDVRVSTLPTGHGERAVLRLLDKEAGRLQLERLGMSPRVLGQLDRLIRQP HGIVLVTGPTGSGKTTTLYAALSRLDAATSNILTVEDPIEYDLPGVSQTQINAKIDMSFAMALRAILRQDPDVIMIGEIR DLETAQIAVQASLTGHLVLATLHTNDSVSAVTRLVDMGVEPFLLASSLLGVLAQRLVRRLCPACKTPVDGGPQYRAVGCP LCNHSGYSGRSGIHELFIVDDGARSHIHDGRDERALRVAAVAAGLRSMREDGQRWVDAGETSPEEVLRVTKDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-107 | 55 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-107 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_784872.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-119 | 59 |
| gspE | YP_784872.1 | general secretion pathway protein E | VFG2048 | Protein | 1e-107 | 54 |
| gspE | YP_784872.1 | general secretion pathway protein E | VFG1876 | Protein | 4e-117 | 52 |
| gspE | YP_784872.1 | general secretion pathway protein E | VFG2426 | Protein | 1e-68 | 46 |
