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Name : kdsB (BAV2102) Accession : YP_786619.1 Strain : Bordetella avium 197N Genome accession: NC_010645 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 2249228 - 2250052 bp Length : 825 bp Strand : + Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : TTGAGCTTCGTCGCCCTCATCCCCGCACGCGCCGCGTCCATCCGGCTGCCCGATAAGCCGCTAGCGGATATCGCTGGCAA GCCGATGGTGGTGCGGGTCGCCGAACGCGCCGCCCTGTCCGGCGCGAGTCTGGTCTGCGTCGCCACGGACGACACCCGGG TTGAGAGAGCCGTCACAGAGCATGGTTTTCCTGCGGTCCGGACGCTGTCCAGCCACCCGACCGGCACCGATCGCCTGGCC GAGGCGGTGCGTATCCTCGGACTGCCCGGCGATGCCATCGTGGTCAACGTGCAGGGTGACGAGCCTCTGATTGAACCGAC CCTTATTGACGGCGTGGCGCAATTGCTGGCCGACAATCCGCAGGCTGACATCGCCACCTGCGCCTGCCCGCTGACCGATG CCCAGGCCCTATTCAATCCCAACGTCGTCAAAGTGGTCTGCGGCAACGATGGCCGAGCGCTGTACTTCTCTCGCGCTCCT ATTCCCTGGGCACGTGACGCCCTGGCGGGTGGCGAGCGTATGCTGGCGCCAGGCCTGCCCGCCTGGCACCACATCGGCCT GTACGCTTACCGCGTCAGTTTTTTGCAGCGTTTCCCCACCCTGGCGCAGGGCGAGCTGGAACGTTTCGAATCGCTGGAGC AGTTGCGCGCCATGGAACATGGGCACACGATTGTGGTCTCGCGCATTTCGGCAGCACCAGCGGCTGGCGTCGATACGCCT GCCGACCTGGATCGCGTGCGCGCCATTTACCTTCAAGCGCCGAAAACCGAGGCAAACCAAGGCTTGATTCAGGTTCAATC CGACCAAGGAAACGACGGGCGATAA Protein sequence : MSFVALIPARAASIRLPDKPLADIAGKPMVVRVAERAALSGASLVCVATDDTRVERAVTEHGFPAVRTLSSHPTGTDRLA EAVRILGLPGDAIVVNVQGDEPLIEPTLIDGVAQLLADNPQADIATCACPLTDAQALFNPNVVKVVCGNDGRALYFSRAP IPWARDALAGGERMLAPGLPAWHHIGLYAYRVSFLQRFPTLAQGELERFESLEQLRAMEHGHTIVVSRISAAPAAGVDTP ADLDRVRAIYLQAPKTEANQGLIQVQSDQGNDGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 6e-33 | 45 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 8e-33 | 45 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 2e-32 | 45 |
