Gene Information

Name : fliP (BAV1706)
Accession : YP_786224.1
Strain : Bordetella avium 197N
Genome accession: NC_010645
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1794003 - 1794770 bp
Length : 768 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGAAGCCCACCCTAAGTCGAACCCTGCCTCTCCTGGGGCTCGCGACCCTTGTCTCGTTGGCGGTAATGCCCAGCGGAGC
CATCGCCCAGGCCACCCTGCCCGCCTTGACCACCACGCCTGGCGTGAACGGTTCACAGACGTATTCGCTCAGCATGCAAA
CCCTGCTGCTGATGACCTCGCTGTCCTTCCTGCCGGCGGCCCTTTTGATGATGACGGGCTTCACGCGCATCATTATCGTG
CTGGGCCTGTTGCGCAGCGCGATGGGGACGGCCATGTCGCCGCCTAACCATGTACTGGTAGGCATTGCCCTATTCCTGAC
CTTCTACACGATGTCCCCGGTGTTTGACAAAATCTACACCGAGGCCTATCAGCCGCTGAGCACGGGCAGCATACCGTTCG
AGACCGCGCTCGAGCGCGCCGGTGCGCCATTACATACTTTTATGCTGCACCAGACGCGCGAAAACGATTTGGCGCTATTC
GCCAATCTGGCCAATATACCCAAGATCGAAGACCCGTCGAAAGTGCCGATGCGGATTTTGATCCCGGCCTTCATCACCAG
CGAACTGAAGACCGCTTTTCAGATCGGCTTCACCATATTCATCCCCTTTCTCATCATCGATCTGGTCGTCGCCAGTGTGC
TGATGGCGCTGGGTATGATGATGGTGCCGCCCGTCACCGTGTCCTTGCCCTTCAAGCTCATGCTTTTTGTGCTGGCCGAC
GGATGGAATCTATTGCTCGGCTCGCTGGCCAAGAGCTTCTACCAATAA

Protein sequence :
MKPTLSRTLPLLGLATLVSLAVMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIV
LGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGSIPFETALERAGAPLHTFMLHQTRENDLALF
ANLANIPKIEDPSKVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLAD
GWNLLLGSLAKSFYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-27 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-27 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-27 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-21 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-26 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-21 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-21 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-20 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-20 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-21 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-31 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-30 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-30 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 9e-31 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 9e-31 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_786224.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-70 73
fliP YP_786224.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-64 68
fliP YP_786224.1 flagellar biosynthesis protein FliP VFG2016 Protein 9e-55 63
fliP YP_786224.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-56 61
fliP YP_786224.1 flagellar biosynthesis protein FliP VFG0519 Protein 4e-31 41