|
Name : fliP (BAV1706) Accession : YP_786224.1 Strain : Bordetella avium 197N Genome accession: NC_010645 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 1794003 - 1794770 bp Length : 768 bp Strand : - Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGAAGCCCACCCTAAGTCGAACCCTGCCTCTCCTGGGGCTCGCGACCCTTGTCTCGTTGGCGGTAATGCCCAGCGGAGC CATCGCCCAGGCCACCCTGCCCGCCTTGACCACCACGCCTGGCGTGAACGGTTCACAGACGTATTCGCTCAGCATGCAAA CCCTGCTGCTGATGACCTCGCTGTCCTTCCTGCCGGCGGCCCTTTTGATGATGACGGGCTTCACGCGCATCATTATCGTG CTGGGCCTGTTGCGCAGCGCGATGGGGACGGCCATGTCGCCGCCTAACCATGTACTGGTAGGCATTGCCCTATTCCTGAC CTTCTACACGATGTCCCCGGTGTTTGACAAAATCTACACCGAGGCCTATCAGCCGCTGAGCACGGGCAGCATACCGTTCG AGACCGCGCTCGAGCGCGCCGGTGCGCCATTACATACTTTTATGCTGCACCAGACGCGCGAAAACGATTTGGCGCTATTC GCCAATCTGGCCAATATACCCAAGATCGAAGACCCGTCGAAAGTGCCGATGCGGATTTTGATCCCGGCCTTCATCACCAG CGAACTGAAGACCGCTTTTCAGATCGGCTTCACCATATTCATCCCCTTTCTCATCATCGATCTGGTCGTCGCCAGTGTGC TGATGGCGCTGGGTATGATGATGGTGCCGCCCGTCACCGTGTCCTTGCCCTTCAAGCTCATGCTTTTTGTGCTGGCCGAC GGATGGAATCTATTGCTCGGCTCGCTGGCCAAGAGCTTCTACCAATAA Protein sequence : MKPTLSRTLPLLGLATLVSLAVMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIV LGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGSIPFETALERAGAPLHTFMLHQTRENDLALF ANLANIPKIEDPSKVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLAD GWNLLLGSLAKSFYQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 2e-27 | 43 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 2e-27 | 43 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 2e-27 | 43 |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 2e-21 | 43 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 1e-26 | 42 |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 3e-21 | 42 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 4e-21 | 41 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 5e-20 | 41 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 5e-20 | 41 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 4e-21 | 41 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-30 | 41 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-30 | 41 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 9e-31 | 41 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 9e-31 | 41 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 7e-31 | 41 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 1e-27 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_786224.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 6e-70 | 73 |
| fliP | YP_786224.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 3e-64 | 68 |
| fliP | YP_786224.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 9e-55 | 63 |
| fliP | YP_786224.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 2e-56 | 61 |
| fliP | YP_786224.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 4e-31 | 41 |
