Gene Information

Name : lolD (BAV1523)
Accession : YP_786049.1
Strain : Bordetella avium 197N
Genome accession: NC_010645
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1576432 - 1577124 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGACTGACACTTCGCTGCAAGCGGCGCTGCGCGCCGAACACCTAAGCAAGGTCTACGACGAAGGTCCGGCGCGCATCCA
GGTGCTGGATGACGTTTCGCTGACGGTGGCGCGTGGCGAGATGGTCGCCATCGTAGGCGCTTCGGGTTCGGGCAAGAGCA
CACTGCTGCATATCCTGGGCCTGCTGGACGTGCCGACCAGCGGCTCGCTGGTGGTGGACGGCACCGCCACCGAGGGCCTG
TCGGAGGCGCGCAAAAGCGCGGTGCGTAATCGCAGCCTGGGTTTTGTTTATCAGTTTCACCATCTGTTGCCGGAATTCTC
GGCCTTGGATAACGTCGCCATGCCCTTGATCGTGCGCCGCATGGACCGCGATCAGGCCCGCCTGCAGGCCCGTGAAGTGC
TGGGCCTGGTGGGTCTGGCTGCACGCGAAGGGCATTATCCGGGCCAGCTTTCGGGCGGCGAGCGCCAGCGCGTGGCCCTG
GCGCGCGCGCTGGTCACGCGGCCCGCTTGCGTGCTGGCCGACGAGCCTACCGGCAACCTGGACCGCCAGACGGCTCAGAA
CATGTTCGAGCTGCTCTCCCGCGTCAATCGCGAGTCGGGCACGGCTTTCGCCATCGTGACGCACGACCCGGAACTGGCGG
CCCGCGCCGACCGGCAGCTGCATATGGCAAACGGGCGCCTGCTGCCGGGTTAA

Protein sequence : 
MTDTSLQAALRAEHLSKVYDEGPARIQVLDDVSLTVARGEMVAIVGASGSGKSTLLHILGLLDVPTSGSLVVDGTATEGL
SEARKSAVRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRMDRDQARLQAREVLGLVGLAAREGHYPGQLSGGERQRVAL
ARALVTRPACVLADEPTGNLDRQTAQNMFELLSRVNRESGTAFAIVTHDPELAARADRQLHMANGRLLPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-29 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_786049.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 2e-39 46
lolD YP_786049.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 1e-33 46
lolD YP_786049.1 lipoprotein releasing system, ATP-binding protein CP001581.1.gene798.p Protein 7e-38 42