Gene Information

Name : YPTS_4215 (YPTS_4215)
Accession : YP_001874615.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : YscJ/HrcJ family type III secretion apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 5609 - 6343 bp
Length : 735 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: ypa:YPA_CD0006 type III secretion lipoprotein

DNA sequence : 
GTGAAAGTTAAGACTTCACTGTCAACATTGATATTAATCTTGTTTTTAACTGGTTGCAAAGTTGATCTTTATACCGGAAT
TAGTCAGAAGGAAGGGAACGAAATGCTTGCGCTGTTGCGCCAAGAAGGCCTTTCCGCAGACAAAGAGCCAGACAAAGATG
GGAAGATTAAGCTCTTGGTTGAGGAGTCAGATGTCGCTCAGGCTATTGATATTCTCAAACGGAAGGGCTATCCACACGAG
AGTTTCTCCACGTTACAGGATGTGTTCCCCAAAGATGGGTTGATATCTTCACCGATAGAAGAGTTGGCGAGGCTTAATTA
TGCCAAGGCGCAAGAGATCTCCCGCACTTTATCTGAAATTGACGGGGTATTAGTGGCTCGAGTGCATGTCGTATTGCCTG
AAGAGCAAAATAACAAAGGTAAGAAGGGTGTAGCAGCATCCGCTTCGGTTTTTATCAAGCATGCAGCAGATATTCAGTTT
GATACCTACATACCTCAGATTAAACAATTAGTGAATAATAGTATTGAGGGGCTGGCCTATGATCGCATCAGTGTCATTTT
GGTGCCATCGGTAGATGTTCGTCAAAGCTCTCATTTACCTCGTAACACGAGCATACTGTCAATTCAAGTGAGTGAAGAGT
CAAAAGGGCATCTTATTGGCTTGTTGTCGTTGCTTATTTTGCTTTTGCCAGTGACCAATCTTGCTCAATATTTTTGGTTA
CAACGCAAGAAGTGA

Protein sequence : 
MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHE
SFSTLQDVFPKDGLISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIKHAADIQF
DTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLPRNTSILSIQVSEESKGHLIGLLSLLILLLPVTNLAQYFWL
QRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 6e-76 76
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4215 YP_001874615.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0409 Protein 9e-97 100
YPTS_4215 YP_001874615.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0218 Protein 5e-73 74
YPTS_4215 YP_001874615.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0051 Protein 1e-31 41