Gene Information

Name : YPTS_4291 (YPTS_4291)
Accession : YP_001874691.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 66102 - 66887 bp
Length : 786 bp
Strand : +
Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: ypa:YPA_CD0016 type III secretion protein

DNA sequence : 
ATGATAGCGGATTTAATCCAAAGACCATTGCTCACTTATACCCTGCTGTTGCCTCGTTTTATGGCTTGTTTTGTTATATT
GCCAGTGTTAAGTAAACAGCTCCTCGGTGGAGTATTGCTGCGTAATGGTATTGTCTGTTCATTGGCTCTTTATGTCTATC
CTGCCGTCGCTAACCAACCTTATATTGAGGTTGATGCGTTTACGTTGATGCTGCTTATCGGCAAAGAGATCATACTGGGG
TTATTGATTGGGTTTGTGGCCACCATTCCTTTCTGGGCCTTAGAATCCGCAGGATTTATTGTAGATAACCAAAGAGGTGC
CGCGATGGCATCTCTACTCAATCCTGGACTTGATAGTCAAACTAGTCCGACTGGTTTACTTTTGACTCAAACGTTAATAA
CAATTTTCTTCAGCGGAGGGGCTTTCCTCTCTTTGCTTTCAGCCCTCTTTCACAGCTATGTAAATTGGCCGGTGGCCAGC
TTTTTCCCTGCAGTTAGTGAACAGTGGGTTGATTTCTTTTATAACCAATTCAGCCAGATACTATTAATCGCCGCTGTATT
GGCTGCTCCTTTACTCATCGCTATGTTTTTAGCTGAATTTGGACTTGCACTCATCAGTCGTTTTGCGCCTTCTTTAAACG
TCTTTGTGCTGGCTATGCCGATAAAAAGCGCGATAGCAAGCCTGTTGTTGGTTATCTACTGTATGCAAATGATGAGTCAT
GCCAGTAAAGCAATGCTGTTGGTTATGGATCCTATAAGTTTACTGATCCCTGTTTTGGAGAAGTAA

Protein sequence : 
MIADLIQRPLLTYTLLLPRFMACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIEVDAFTLMLLIGKEIILG
LLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSGGAFLSLLSALFHSYVNWPVAS
FFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSH
ASKAMLLVMDPISLLIPVLEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-50 71

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4291 YP_001874691.1 type III secretion protein SpaR/YscT/HrcT VFG0396 Protein 5e-76 100
YPTS_4291 YP_001874691.1 type III secretion protein SpaR/YscT/HrcT VFG0186 Protein 6e-44 69