Gene Information

Name : YPTS_4290 (YPTS_4290)
Accession : YP_001874690.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 65839 - 66105 bp
Length : 267 bp
Strand : +
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: ypa:YPA_CD0017 type III secretion protein

DNA sequence : 
ATGAGTCAAGGTGACATAATTCACTTCACCAGTCAGGCATTATGGCTGGTGCTAGTCCTTTCAATGCCGCCGGTGTTAGT
GGCTGCGGTGGTAGGAACTTTGGTATCTTTAGTACAAGCTTTAACGCAAATCCAAGAGCAAACTCTGGGCTTCGTTATCA
AATTGATCGCTGTGGTGGTCACACTGTTTGCTACCGCCTCGTGGCTTGGTAATGAATTGCACAGTTTTGCAGAAATGACC
ATGATGAAGATACAAGGCATAAGATGA

Protein sequence : 
MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMT
MMKIQGIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-19 79
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 4e-08 52
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 4e-08 52
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-08 52
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-08 52
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-08 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4290 YP_001874690.1 HrpO family type III secretion protein VFG0395 Protein 7e-25 100
YPTS_4290 YP_001874690.1 HrpO family type III secretion protein VFG0187 Protein 2e-11 75
YPTS_4290 YP_001874690.1 HrpO family type III secretion protein VFG0043 Protein 5e-08 56
YPTS_4290 YP_001874690.1 HrpO family type III secretion protein VFG0520 Protein 1e-08 52