Gene Information

Name : YPTS_4288 (YPTS_4288)
Accession : YP_001874688.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 64264 - 65187 bp
Length : 924 bp
Strand : +
Note : TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: yps:pYV0070 type III secretion system protein

DNA sequence : 
ATGAGTTTGTTAACCTTGCCACAGGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCAACAAAACTA
CTTGTGGGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGA
AGGGAACGCACTTCACGCTCTACTGTTTTGGCAATGATCTGGCTAACTGGTTAACCGCCGACTTACTAGGGGCTCCATTC
TTTACTCTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATAT
AGCGACAGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGC
TAACCTCAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTATTTCT
TTGCGTTGGCATAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGG
GAGTGGGCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGG
AGTTTATCGGTATGAGTCATGAATCTGACGAACTTAACCCCGAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTT
AGCTTTGAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAAC
ACCTGTTGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGGCGCC
TCGGGGTTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF
FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS
LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQV
SFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 6e-61 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4288 YP_001874688.1 type III secretion system protein VFG0393 Protein 4e-139 100
YPTS_4288 YP_001874688.1 type III secretion system protein VFG0189 Protein 7e-45 41