Gene Information

Name : YPTS_4286 (YPTS_4286)
Accession : YP_001874686.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion YscO fmaily protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 62436 - 62900 bp
Length : 465 bp
Strand : +
Note : PFAM: type III secretion YscO fmaily protein; KEGG: yps:pYV0068 YscO; putative type III secretion protein

DNA sequence : 
ATGATACGCCGCCTGCACCGGGTTAAAGTTTTACGCGTTGAACGTGCGGAGAAAGCCATCAAGACTCAGCAAGCTTGCTT
GCAGGCAGCTCATCGACGTCATCAAGAGGCGGTGCAAACCAGTCAGGATTACCATTTGTGGCGTATTGATGAGGAGCAAC
GTCTATTTGATCAGCGAAAAAACACCACACTGAATTGTAAAGATTTGGAGAAATGGCAGCGACAAATAGCGTCGCTACGT
GAAAAGGAGGCCAATTATGAACTGGAGTGCGCCAAATTATTGGAACGTTTAGCCAATGAGCGTGAGCGCCTTACGTTATG
CCAAAAGATGCTGCAACAGGCTCGTCATAAGGAAAATAAGTTTCTCGAGCTAGTGCAACGAGAAGATGAAGATGAGTTAA
ATCAACAACATTATCAGGAAGAACAAGAACAAGAAGAGTTTCTACAGCATCACAGGAACGCCTAA

Protein sequence : 
MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRIDEEQRLFDQRKNTTLNCKDLEKWQRQIASLR
EKEANYELECAKLLERLANERERLTLCQKMLQQARHKENKFLELVQREDEDELNQQHYQEEQEQEEFLQHHRNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscO AAO18043.1 LscO Virulence TTSS locus Protein 4e-21 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4286 YP_001874686.1 type III secretion YscO fmaily protein VFG0391 Protein 8e-47 99