Gene Information

Name : YPTS_4214 (YPTS_4214)
Accession : YP_001874614.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : YscI/HrpB family type III secretion apparatus protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5255 - 5602 bp
Length : 348 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus protein, YscI/HrpB family; PFAM: type III secretion system YscI/HrpB domain protein; KEGG: ypa:YPA_CD0007 type III secretion protein

DNA sequence : 
ATGCCGAACATAGAAATAGCTCAGGCCGATGAGGTGATCATAACCACGCTGGAGGAATTAGGGCCGGCAGAGCCAACAAC
TGACCAAATAATGCGCTTTGATGCGGCAATGTCAGAAGATACGCAGGGACTGGGCCATTCACTCCTCAAGGAGGTTAGTG
ATATTCAGAAGTCTTTTAAGACGGTTAAAAGTGACTTACACACTAAGCTGGCTGTTTCAGTTGATAATCCCAACGACCTG
ATGCTAATGCAATGGTCACTTATCCGTATAACAATCCAAGAAGAACTTATCGCCAAGACTGCCGGGCGAATGAGCCAAAA
TGTTGAAACCTTGTCGAAGGGGGGGTGA

Protein sequence : 
MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGLGHSLLKEVSDIQKSFKTVKSDLHTKLAVSVDNPNDL
MLMQWSLIRITIQEELIAKTAGRMSQNVETLSKGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscI AAO18028.1 LscI Virulence TTSS locus Protein 1e-24 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4214 YP_001874614.1 YscI/HrpB family type III secretion apparatus protein VFG0408 Protein 3e-49 100
YPTS_4214 YP_001874614.1 YscI/HrpB family type III secretion apparatus protein VFG0217 Protein 2e-21 49