Gene Information

Name : YPTS_4278 (YPTS_4278)
Accession : YP_001874678.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion system regulator LcrR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 56180 - 56620 bp
Length : 441 bp
Strand : -
Note : TIGRFAM: type III secretion system regulator LcrR; PFAM: Type III secretion system regulator LcrR; KEGG: yps:pYV0059 LcrR; hypothetical protein LcrR

DNA sequence : 
ATGATGGCAGATCCTTTAATTCCGTGGCTTACCGAACATGGCTTGGTTTGCCACCCTCATACTTTGTCTGGCACCCCCAT
TTCTTTAGGTTCGGCCTTTCAATTAGCTGGCCTCAAGCTTGCCTGGCGCGTAGAAATTGAACAAAGGCGGGTTTGGATCG
TGCTTATCCAACGAGTGGAACAACGTCGAGGGCTGAAAAATCCCTTCGCGGCACTTTATATGTTAGCTAATGCAGCGCGG
GCCGTTCTTGGCCCTGACTATTATCTGTATGGCAATGTCGATGTACTGGCGGGGAGTTCTCTCAGTACGCAACGGCTCGC
TCATTTTTATCGGCGTTGGACCGGGGCCAAAGAATTAAGCACCGGGTGGTTCTCACTAAAAGTATCACAAGTCATCACCT
TATCTAATATGAAAAAGCGACAAAACAACGGCTTTGCCTGA

Protein sequence : 
MMADPLIPWLTEHGLVCHPHTLSGTPISLGSAFQLAGLKLAWRVEIEQRRVWIVLIQRVEQRRGLKNPFAALYMLANAAR
AVLGPDYYLYGNVDVLAGSSLSTQRLAHFYRRWTGAKELSTGWFSLKVSQVITLSNMKKRQNNGFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssR AAO18051.1 LssR Virulence TTSS locus Protein 4e-26 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4278 YP_001874678.1 type III secretion system regulator LcrR VFG0383 Protein 3e-59 100
YPTS_4278 YP_001874678.1 type III secretion system regulator LcrR VFG0199 Protein 1e-26 52