Gene Information

Name : YPTS_4275 (YPTS_4275)
Accession : YP_001874675.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 54350 - 54856 bp
Length : 507 bp
Strand : -
Note : TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; KEGG: yen:YEP0014 YopB/D chaperone/regulatory protein

DNA sequence : 
ATGCAACAAGAGACGACAGACACTCAAGAATACCAGCTGGCAATGGAATCCTTCCTAAAAGGAGGGGGAACTATCGCCAT
GCTCAACGAAATTTCAAGTGATACTTTAGAGCAACTCTACTCTCTTGCATTTAACCAATACCAGTCAGGAAAATACGAGG
ATGCTCACAAGGTCTTTCAAGCTCTCTGTGTGCTAGACCACTATGATTCACGTTTCTTTTTAGGGCTAGGCGCTTGTCGT
CAAGCCATGGGGCAATACGACTTAGCGATTCATAGCTACAGCTATGGCGCCATAATGGATATAAAAGAACCTCGTTTTCC
GTTTCATGCGGCCGAATGTTTACTGCAAAAGGGAGAGCTTGCTGAAGCAGAAAGTGGCTTGTTCTTGGCTCAAGAGCTTA
TCGCAGACAAACCTGAGTTTAAGGAGCTTTCCACCCGAGTTAGCTCAATGTTAGAAGCAATTAAATTGAAAAAGGAGATG
GAACATGAGTGCGTTGATAACCCATGA

Protein sequence : 
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR
QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKPEFKELSTRVSSMLEAIKLKKEM
EHECVDNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssH AAO18054.1 LssH Virulence TTSS locus Protein 3e-48 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4275 YP_001874675.1 type III secretion low calcium response chaperone LcrH/SycD VFG0380 Protein 1e-74 99
YPTS_4275 YP_001874675.1 type III secretion low calcium response chaperone LcrH/SycD VFG0202 Protein 5e-45 58